snakemake-executor-plugin-cluster-generic/.github/workflows/ci.yml at fb21c369d8c20797c5fc4d6da96afd4bf0efeeca · snakemake/snakemake-executor-plugin-cluster-generic · GitHub

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name: CI

on:
  push:
    branches:
      - main
  pull_request:

jobs:
  format:
    runs-on: ubuntu-latest
    steps:
      - name: Check out the code
        uses: actions/checkout@v6

      - name: Setup pixi
        uses: prefix-dev/setup-pixi@v0

      - name: Check formatting
        run: pixi run format --check

  lint:
    runs-on: ubuntu-latest
    steps:
      - name: Check out the code
        uses: actions/checkout@v6

      - name: Setup pixi
        uses: prefix-dev/setup-pixi@v0

      - name: Check code
        run: pixi run lint

  typecheck:
    runs-on: ubuntu-latest
    steps:
      - name: Check out the code
        uses: actions/checkout@v6

      - name: Setup pixi
        uses: prefix-dev/setup-pixi@v0

      - name: Check code
        run: pixi run typecheck

  test:
    runs-on: ubuntu-latest
    steps:
      - uses: actions/checkout@v6

      - name: Setup pixi
        uses: prefix-dev/setup-pixi@v0

      - name: Run pytest
        run: pixi run test -v

      - name: Run Coverage
        run: pixi run coverage-report