I am having an issue with the cluster-generic-submit-cmd command (probably the other commands have the same issue too).
When I do cluster-generic-submit-cmd: "./sge-submit.py" it runs normally, but when I try to add the dependencies (cluster-generic-submit-cmd: "./sge-submit.py --depend "{dependencies}""), it can't find the py file, because it's looking on the snakefile directory.
I am having an issue with the cluster-generic-submit-cmd command (probably the other commands have the same issue too).
When I do cluster-generic-submit-cmd: "./sge-submit.py" it runs normally, but when I try to add the dependencies (cluster-generic-submit-cmd: "./sge-submit.py --depend "{dependencies}""), it can't find the py file, because it's looking on the snakefile directory.