CHANGELOG.md

Changelog

0.18.3 (2026-06-26)

Bug Fixes

• load concrete Env/EnvSpec classes instead of abstract bases (#58) (78c2d62)

0.18.2 (2026-06-02)

Bug Fixes

• suffix replacement Path handling (7e9f39f)

0.18.1 (2026-06-02)

Bug Fixes

• handle suffix replacement in test suite (8197cfa)

0.18.0 (2026-06-02)

Features

• suffix replacement (#54) (6282e25)

Bug Fixes

• remove debug code (ffa0804)

0.17.0 (2026-03-10)

Features

• allow to select whether within env shall be included in hash (8b9291d)

0.16.5 (2026-03-10)

Bug Fixes

• improved mountpoint handling (2362a04)

0.16.4 (2026-03-10)

Bug Fixes

• temp handling in test suite (3e0c64b)

0.16.3 (2026-03-09)

Bug Fixes

• return Env class from EnvSpec (4cecce6)

0.16.2 (2026-03-09)

Bug Fixes

• call identity attribute method (33f7a56)
• make EnvSpecSourceFile hashable and comparable (b6b6dc9)

0.16.1 (2026-03-08)

Bug Fixes

• use SoftwareReport from snakemake-interface-common (09d79f0)

0.16.0 (2026-03-08)

Features

• allow cached attribute upon initialization (895ad9d)

0.15.0 (2026-03-08)

Features

• add test method for contains_executable method of EnvBase (388cb23)

0.14.0 (2026-03-06)

Features

• cache individual assets on the snakemake side of the API (4f3ce17)
• ensure that caching happens race condition free on shared network filesystems (c2b3d4d)
• more convenient cache API (0a3228b)

0.13.0 (2026-02-26)

Features

• add method to check whether environment contains a specific executable (b81bdd7)

0.12.1 (2026-02-26)

Bug Fixes

• use proper args when calling env class (5cc8b96)

0.12.0 (2026-02-26)

Features

• make env spec generic (c7b9971)

Bug Fixes

• make generic args more flexible (af21397)
• relax typing (0f10324)
• simplify mountpoint information into self.mountpoints, complemented by self.tempdir holding the temporary directory to use (7112ee6)

0.11.0 (2026-02-23)

Features

• make EnvBase generic; enable EnvSpecBase recursive attribute modification (1425a51)

0.10.2 (2026-02-18)

Bug Fixes

• allow missing args argument for shell executable (d7bca35)

0.10.1 (2026-02-17)

Bug Fixes

• deployments path in test suite (971dea2)
• hash building for enclosed environments and deployment test (#38) (89d45d8)
• unique deployment path (d953afe)

0.10.0 (2026-02-13)

Features

• add get_within() method to TestSoftwareDeploymentBase (1f990f1)

0.9.1 (2026-02-13)

Bug Fixes

• typing, add pyrefly, migrate to pixi (#34) (6532631)

0.9.0 (2025-10-01)

Features

• add source cache path attribute for mounting in e.g. containers (#33) (7962913)
• allow removal of pinfile (#31) (8e453b2)

0.8.0 (2025-09-19)

Features

• use class for representing shell executable (fd3e9f9)

0.7.7 (2025-09-19)

Bug Fixes

• use EnvBase.run_cmd in test suite (e46ee97)

0.7.6 (2025-09-19)

Bug Fixes

• use login shell by default (d7fcf57)

0.7.5 (2025-09-15)

Bug Fixes

• use method for testing if env is deployable in test suite (1c64a8f)

0.7.4 (2025-09-12)

Bug Fixes

• properly check source file type in test suite (#25) (b0df467)

0.7.3 (2025-09-12)

Bug Fixes

• use Protocol type (#23) (2a10a4a)

0.7.2 (2025-09-12)

Bug Fixes

• handle None type for source file attributes in EnvSpec (#21) (247d066)

0.7.1 (2025-09-12)

Bug Fixes

• adapt tests to API changes (#19) (3f37e5f)

0.7.0 (2025-09-11)

Features

• deploy from archive (#18) (f6d62bd)
• pass tempdir to EnvBase (#16) (28d8351)

0.6.1 (2025-03-08)

Bug Fixes

• change methods into classmethods (358695c)
• remove deploy_from_archive (8831501)

0.6.0 (2025-03-07)

Features

• introduce EnvSpecSourceFile as a container data class for paths or uris mentioned in the EnvSpec that shall be cached and resolved by Snakemake's source caching mechanism (#13) (d359609)

0.5.0 (2025-03-07)

Features

• make deploy async (#11) (217b965)

0.4.0 (2025-03-07)

Features

• add abstract method for reporting software (#9) (f7b6d6c)

0.3.0 (2025-03-06)

Features

• add method to modify source paths in EnvSpecBase (d946bb4)
• Env and EnvSpec comparison and hashing (37c334f)
• introduce common settings (8de4dec)

Bug Fixes

• check provides validity (8b39604)
• test suite abstract method (9d278f9)

0.2.3 (2025-03-06)

Bug Fixes

• expose shell executable setting (ca35ce5)

0.2.2 (2025-03-06)

Bug Fixes

• fix EnvBase.once decorator (ea468eb)

0.2.1 (2025-03-06)

Bug Fixes

• fix function args of once decorator (74dde47)

0.2.0 (2025-03-06)

Features

• cache decorator and "or"/fallback support for EnvSpecBase (ee465b0)

0.1.1 (2025-03-05)

Bug Fixes

• run test cmd in bash (85effcf)

0.1.0 (2025-03-05)

Miscellaneous Chores

• release 0.1.0 (3dd0101)