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Author: github-actions[bot]

data.json

@@ -104783,30 +104783,6 @@
     "topics": [],
     "updated_at": 1751876300.0
   },
-  {
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-    "description": "Reproducibility code and analyses for a process-based, threshold-free framwork for inferring superspreading molecular transmission clusters.",
-    "formatting": "[DEBUG] \n[DEBUG] In file \"/tmp/tmps7n96fo4/workflow/Snakefile\":  Formatted content is different from original\n[INFO] 1 file(s) would be changed \ud83d\ude2c\n\nsnakefmt version: 0.11.5",
-    "full_name": "ydnkka/epilink-evaluation",
-    "latest_release": null,
-    "linting": "Lints for rule characterisation (line 75, /tmp/tmps7n96fo4/workflow/Snakefile):\n    * No log directive defined:\n      Without a log directive, all output will be printed to the terminal. In\n      distributed environments, this means that errors are harder to discover.\n      In local environments, output of concurrent jobs will be mixed and become\n      unreadable.\n      Also see:\n      https://snakemake.readthedocs.io/en/stable/snakefiles/rules.html#log-files\n    * Specify a conda environment or container for each rule.:\n      This way, the used software for each specific step is documented, and the\n      workflow can be executed on any machine without prerequisites.\n      Also see:\n      https://snakemake.readthedocs.io/en/latest/snakefiles/deployment.html#integrated-package-management\n      https://snakemake.readthedocs.io/en/latest/snakefiles/deployment.html#running-jobs-in-containers\n\nLints for rule scovmod (line 83, /tmp/tmps7n96fo4/workflow/Snakefile):\n    * No log directive defined:\n      Without a log directive, all output will be printed to the terminal. In\n      distributed environments, this means that errors are harder to discover.\n      In local environments, output of concurrent jobs will be mixed and become\n      unreadable.\n      Also see:\n      https://snakemake.readthedocs.io/en/stable/snakefiles/rules.html#log-files\n    * Specify a conda environment or container for each rule.:\n      This way, the used software for each specific step is documented, and the\n      workflow can be executed on any machine without prerequisites.\n      Also see:\n      https://snakemake.readthedocs.io/en/latest/snakefiles/deployment.html#integrated-package-management\n      https://snakemake.readthedocs.io/en/latest/snakefiles/deployment.html#running-jobs-in-containers\n\nLints for rule synthetic_data (line 91, /tmp/tmps7n96fo4/workflow/Snakefile):\n    * No log directive defined:\n      Without a log directive, all output will be printed to the terminal. In\n      distributed environments, this means that errors are harder to discover.\n      In local environments, output of concurrent jobs will be mixed and become\n      unreadable.\n      Also see:\n      https://snakemake.readthedocs.io/en/stable/snakefiles/rules.html#log-files\n    * Specify a conda environment or container for each rule.:\n      This way, the used software for each specific step is documented, and the\n      workflow can be executed on any machine without prerequisites.\n      Also see:\n      https://snakemake.readthedocs.io/en/latest/snakefiles/deployment.html#integrated-package-management\n      https://snakemake.readthedocs.io/en/latest/snakefiles/deployment.html#running-jobs-in-containers\n\nLints for rule pairwise_benchmark (line 108, /tmp/tmps7n96fo4/workflow/Snakefile):\n    * No log directive defined:\n      Without a log directive, all output will be printed to the terminal. In\n      distributed environments, this means that errors are harder to discover.\n      In local environments, output of concurrent jobs will be mixed and become\n      unreadable.\n      Also see:\n      https://snakemake.readthedocs.io/en/stable/snakefiles/rules.html#log-files\n    * Specify a conda environment or container for each rule.:\n      This way, the used software for each specific step is documented, and the\n      workflow can be executed on any machine without prerequisites.\n      Also see:\n      https://snakemake.readthedocs.io/en/latest/snakefiles/deployment.html#integrated-package-management\n      https://snakemake.readthedocs.io/en/latest/snakefiles/deployment.html#running-jobs-in-containers\n\nLints for rule sparsify_analysis (line 122, /tmp/tmps7n96fo4/workflow/Snakefile):\n    * No log directive defined:\n      Without a log directive, all output will be printed to the terminal. In\n      distributed environments, this means that errors are harder to discover.\n      In local environments, output of concurrent jobs will be mixed and become\n      unreadable.\n      Also see:\n      https://snakemake.readthedocs.io/en/stable/snakefiles/rules.html#log-files\n    * Specify a conda environment or container for each rule.:\n      This way, the used software for each specific step is documented, and the\n      workflow can be executed on any machine without prerequisites.\n      Also see:\n      https://snakemake.readthedocs.io/en/latest/snakefiles/deployment.html#integrated-package-management\n      https://snakemake.readthedocs.io/en/latest/snakefiles/deployment.html#running-jobs-in-containers\n\nLints for rule synthetic_clustering (line 137, /tmp/tmps7n96fo4/workflow/Snakefile):\n    * No log directive defined:\n      Without a log directive, all output will be printed to the terminal. In\n      distributed environments, this means that errors are harder to discover.\n      In local environments, output of concurrent jobs will be mixed and become\n      unreadable.\n      Also see:\n      https://snakemake.readthedocs.io/en/stable/snakefiles/rules.html#log-files\n    * Specify a conda environment or container for each rule.:\n      This way, the used software for each specific step is documented, and the\n      workflow can be executed on any machine without prerequisites.\n      Also see:\n      https://snakemake.readthedocs.io/en/latest/snakefiles/deployment.html#integrated-package-management\n      https://snakemake.readthedocs.io/en/latest/snakefiles/deployment.html#running-jobs-in-containers\n\nLints for rule clustering_evaluation (line 152, /tmp/tmps7n96fo4/workflow/Snakefile):\n    * No log directive defined:\n      Without a log directive, all output will be printed to the terminal. In\n      distributed environments, this means that errors are harder to discover.\n      In local environments, output of concurrent jobs will be mixed and become\n      unreadable.\n      Also see:\n      https://snakemake.readthedocs.io/en/stable/snakefiles/rules.html#log-files\n    * Specify a conda environment or container for each rule.:\n      This way, the used software for each specific step is documented, and the\n      workflow can be executed on any machine without prerequisites.\n      Also see:\n      https://snakemake.readthedocs.io/en/latest/snakefiles/deployment.html#integrated-package-management\n      https://snakemake.readthedocs.io/en/latest/snakefiles/deployment.html#running-jobs-in-containers\n\nLints for rule temporal_stability (line 168, /tmp/tmps7n96fo4/workflow/Snakefile):\n    * No log directive defined:\n      Without a log directive, all output will be printed to the terminal. In\n      distributed environments, this means that errors are harder to discover.\n      In local environments, output of concurrent jobs will be mixed and become\n      unreadable.\n      Also see:\n      https://snakemake.readthedocs.io/en/stable/snakefiles/rules.html#log-files\n    * Specify a conda environment or container for each rule.:\n      This way, the used software for each specific step is documented, and the\n      workflow can be executed on any machine without prerequisites.\n      Also see:\n      https://snakemake.readthedocs.io/en/latest/snakefiles/deployment.html#integrated-package-management\n      https://snakemake.readthedocs.io/en/latest/snakefiles/deployment.html#running-jobs-in-containers\n\nLints for rule boston (line 182, /tmp/tmps7n96fo4/workflow/Snakefile):\n    * No log directive defined:\n      Without a log directive, all output will be printed to the terminal. In\n      distributed environments, this means that errors are harder to discover.\n      In local environments, output of concurrent jobs will be mixed and become\n      unreadable.\n      Also see:\n      https://snakemake.readthedocs.io/en/stable/snakefiles/rules.html#log-files\n    * Specify a conda environment or container for each rule.:\n      This way, the used software for each specific step is documented, and the\n      workflow can be executed on any machine without prerequisites.\n      Also see:\n      https://snakemake.readthedocs.io/en/latest/snakefiles/deployment.html#integrated-package-management\n      https://snakemake.readthedocs.io/en/latest/snakefiles/deployment.html#running-jobs-in-containers\n\nLints for rule figures (line 193, /tmp/tmps7n96fo4/workflow/Snakefile):\n    * No log directive defined:\n      Without a log directive, all output will be printed to the terminal. In\n      distributed environments, this means that errors are harder to discover.\n      In local environments, output of concurrent jobs will be mixed and become\n      unreadable.\n      Also see:\n      https://snakemake.readthedocs.io/en/stable/snakefiles/rules.html#log-files\n    * Specify a conda environment or container for each rule.:\n      This way, the used software for each specific step is documented, and the\n      workflow can be executed on any machine without prerequisites.\n      Also see:\n      https://snakemake.readthedocs.io/en/latest/snakefiles/deployment.html#integrated-package-management\n      https://snakemake.readthedocs.io/en/latest/snakefiles/deployment.html#running-jobs-in-containers\n\nLints for rule report (line 229, /tmp/tmps7n96fo4/workflow/Snakefile):\n    * No log directive defined:\n      Without a log directive, all output will be printed to the terminal. In\n      distributed environments, this means that errors are harder to discover.\n      In local environments, output of concurrent jobs will be mixed and become\n      unreadable.\n      Also see:\n      https://snakemake.readthedocs.io/en/stable/snakefiles/rules.html#log-files\n    * Specify a conda environment or container for each rule.:\n      This way, the used software for each specific step is documented, and the\n      workflow can be executed on any machine without prerequisites.\n      Also see:\n      https://snakemake.readthedocs.io/en/latest/snakefiles/deployment.html#integrated-package-management\n      https://snakemake.readthedocs.io/en/latest/snakefiles/deployment.html#running-jobs-in-containers\n\n",
-    "mandatory_flags": [],
-    "non_standardized_reason": [
-      "no .snakemake-workflow-catalog.yml found in repo root",
-      "no config/README.md found in repo root"
-    ],
-    "report": false,
-    "rulegraph": null,
-    "schemas": null,
-    "software_stack_deployment": null,
-    "standardized": false,
-    "stargazers_count": 0,
-    "subscribers_count": 0,
-    "topics": [],
-    "updated_at": 1775600891.0,
-    "wrappers": {}
-  },
   {
     "config_readme": null,
     "data_format": 2,