feat: Add configurable protocol support to ensembl reference download#2649

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belowlab:add_http_protocol_support_vep_ensembl

Commits on Feb 15, 2024

Add the support for configurable protocol, ftp, http, or https to ensembl reference data download and vep cache download.
pettyalex
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Commits on Feb 19, 2024

Commits on Feb 22, 2024

Split off https into different snakemake files to avoid name collision. Add each new test case to test.py.
pettyalex
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Commits on Feb 23, 2024

Fix tests for annotation and make https protocol output gzipped.
pettyalex
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