Deleted the code related to interface search mode

Author: rachelse

backend/complexsearchjob.go

@@ -10,11 +10,10 @@ import (
 )
 
 type ComplexSearchJob struct {
-	Size     int      `json:"size" validate:"required"`
-	Database []string `json:"database" validate:"required"`
-	Mode     string   `json:"mode" validate:"oneof=3di tmalign 3diaa lolalign"`
-	// Interface bool     `json:"interface"`
-	TaxFilter string `json:"taxfilter"`
+	Size      int      `json:"size" validate:"required"`
+	Database  []string `json:"database" validate:"required"`
+	Mode      string   `json:"mode" validate:"oneof=3di tmalign 3diaa lolalign"`
+	TaxFilter string   `json:"taxfilter"`
 	query     string
 }
 
@@ -23,7 +22,6 @@ func (r ComplexSearchJob) Hash() Id {
 	h.Write(([]byte)(JobComplexSearch))
 	h.Write([]byte(r.query))
 	h.Write([]byte(r.Mode))
-	// h.Write([]byte(strconv.FormatBool(r.Interface)))
 	if r.TaxFilter != "" {
 		h.Write([]byte(r.TaxFilter))
 	}
@@ -50,13 +48,11 @@ func (r ComplexSearchJob) WritePDB(path string) error {
 	return nil
 }
 
-// func NewComplexSearchJobRequest(query string, dbs []string, validDbs []Params, mode string, isInterface bool, resultPath string, email string, taxfilter string) (JobRequest, error) {
 func NewComplexSearchJobRequest(query string, dbs []string, validDbs []Params, mode string, resultPath string, email string, taxfilter string) (JobRequest, error) {
 	job := ComplexSearchJob{
 		max(strings.Count(query, "HEADER"), 1),
 		dbs,
 		mode,
-		// isInterface,
 		taxfilter,
 		query,
 	}

backend/server.go

@@ -277,7 +277,6 @@ func server(jobsystem JobSystem, config ConfigRoot) {
 		var dbs []string
 		var mode string
 		var email string
-		// var isInterface bool
 		var iterativesearch bool
 		var taxfilter string
 
@@ -299,7 +298,6 @@ func server(jobsystem JobSystem, config ConfigRoot) {
 			query = buf.String()
 			dbs = req.Form["database[]"]
 			mode = req.FormValue("mode")
-			// isInterface = req.FormValue("interface") == "true"
 			email = req.FormValue("email")
 			iterativesearch = req.FormValue("iterativesearch") == "true"
 			taxfilter = req.FormValue("taxfilter")
@@ -312,7 +310,6 @@ func server(jobsystem JobSystem, config ConfigRoot) {
 			query = req.FormValue("q")
 			dbs = req.Form["database[]"]
 			mode = req.FormValue("mode")
-			// isInterface = req.FormValue("interface") == "true"
 			email = req.FormValue("email")
 			iterativesearch = req.FormValue("iterativesearch") == "true"
 			taxfilter = req.FormValue("taxfilter")
@@ -332,7 +329,6 @@ func server(jobsystem JobSystem, config ConfigRoot) {
 			modeIdx := isIn("complex", modes)
 			if modeIdx != -1 {
 				modeWithoutComplex := strings.Join(append(modes[:modeIdx], modes[modeIdx+1:]...), "-")
-				// request, err = NewComplexSearchJobRequest(query, dbs, databases, modeWithoutComplex, isInterface, config.Paths.Results, email, taxfilter)
 				request, err = NewComplexSearchJobRequest(query, dbs, databases, modeWithoutComplex, config.Paths.Results, email, taxfilter)
 			} else {
 				request, err = NewStructureSearchJobRequest(query, dbs, databases, mode, config.Paths.Results, email, iterativesearch, taxfilter)

frontend/ApiDialog.vue

@@ -21,9 +21,6 @@
                 <span v-if="mode">
                   &nbsp;&nbsp;-F 'mode={{mode}}' \<br>
                 </span>
-                <!-- <span v-if="interface">
-                  &nbsp;&nbsp;-F 'interface={{interface}}' \<br>
-                </span> -->
                 <span v-if="taxfilter">
                   &nbsp;&nbsp;-F 'taxfilter={{taxfilter}}' \<br>
                 </span>
@@ -48,7 +45,6 @@ with open(file, "rb") as f:
 <span style="white-space: normal;">
 <span v-if="email">&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;("email", "{{ email }}"),<br></span>
 <span v-if="mode">&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;("mode", "{{ mode }}"),<br></span>
-<!-- <span v-if="interface">&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;("interface", "{{ interface }}"),<br></span> -->
 <span v-if="taxfilter">&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;("taxfilter", "{{ taxfilter }}"),<br></span>
 <span v-for="(path, i) in database" :key="`db-${i}`">&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;("database[]", "{{ path }}"),<br></span>
 <span v-for="(val, key) in $attrs" :key="key">&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;("{{ key }}", "{{ val }}"),<br></span>
@@ -84,10 +80,6 @@ export default {
       type: String,
       default: ''
     },
-    // interface: {
-    //   type: Boolean,
-    //   default: false
-    // },
     database: {
       type: Array,
       default: []

frontend/MultimerSearch.vue

@@ -12,7 +12,6 @@
                 </template>
             </template>
             <template slot="toolbar-extra">
-                    <!-- :interface="interface" -->
                 <api-dialog
                     :disabled="searchDisabled"
                     :email="email"
@@ -64,7 +63,6 @@
                     :hideEmail="hideEmail"
                     :multimer-only="true"
                     ></databases>
-                    <!-- :interface="interface" -->
 
                 <v-radio-group v-model="mode">
                     <v-tooltip open-delay="300" top>
@@ -81,17 +79,6 @@
                                     ></v-radio>
                 </v-radio-group>
 
-                <!-- <v-checkbox v-model="interface" hide-details>
-                    <template v-slot:label>
-                        <v-tooltip open-delay="300" top>
-                            <template v-slot:activator="{ on }">
-                                <label v-on="on">Interface&nbsp;<v-icon color="#FFFFFFB3" style="margin-top:-3px" small v-on="on">{{ $MDI.HelpCircleOutline }}</v-icon></label>
-                            </template>
-                            <span v-html="$STRINGS.MODE_HELP_INTERFACE"></span>
-                        </v-tooltip>
-                    </template>
-                </v-checkbox>
-     -->
                 <TaxonomyAutocomplete v-model="taxFilter"></TaxonomyAutocomplete>
 
                 <v-tooltip v-if="!$ELECTRON && !hideEmail" open-delay="300" top>
@@ -184,7 +171,6 @@ export default {
             mode: storage.getItem('mode') || ('complex-' + this.$STRINGS.MODE_DEFAULT_KEY),
             modes: Array.from({length: this.$STRINGS.MODE_COUNT - 0}, (_, i) => i + 1)
                     .reduce((dict, i, _)  => { dict[this.$STRINGS['MODE_KEY_' + i]] = this.$STRINGS['MODE_TITLE_' + i]; return dict; }, {}),
-            // interface: (storage.getItem('interface') === 'true') || false,
             email: storage.getItem('email') || "",
             hideEmail: true,
             query: "",
@@ -228,9 +214,6 @@ export default {
         mode(value) {
             storage.setItem('mode', value);
         },
-        // interface(value) {
-        //     storage.setItem('interface', value);
-        // },
         email(value) {
             storage.setItem('email', value);
         },
@@ -253,7 +236,6 @@ export default {
                 q: this.query,
                 database: this.database,
                 mode: this.mode,
-                // interface: this.interface,
                 email: this.email
             };
             if (typeof(request.q) === 'string' && request.q != '') {

frontend/assets/foldseek.en_US.po

@@ -150,10 +150,6 @@ msgstr ""
 "<strong>LoLAlign:</strong> fast prefilter using the 3Di alphabet and "
 "alignment using LoL-align (probabilistic multi-domain structure alignment)"
 
-msgid "MODE_HELP_INTERFACE"
-msgstr ""
-"Search for similar protein-protein interfaces."
-
 msgid "MODE_COUNT"
 msgstr "3"