--majority parameter was missing from taxonomy workflow

Author: milot-mirdita

src/commons/Parameters.cpp

@@ -1199,14 +1199,10 @@ Parameters::Parameters():
     taxonomy.push_back(&PARAM_ORF_FILTER_S);
     taxonomy.push_back(&PARAM_LCA_MODE);
     taxonomy.push_back(&PARAM_TAX_OUTPUT_MODE);
+    taxonomy = combineList(taxonomy, aggregatetaxweights);
     taxonomy = combineList(taxonomy, lca);
     taxonomy = combineList(taxonomy, searchworkflow);
 
-    // taxpercontig
-    taxpercontig = combineList(taxonomy, aggregatetax);
-    removeParameter(taxpercontig, PARAM_TRANSLATE);
-    removeParameter(taxpercontig, PARAM_TAX_OUTPUT_MODE);
-
     // easy taxonomy
     easytaxonomy = combineList(taxonomy, addtaxonomy);
     easytaxonomy = combineList(easytaxonomy, taxonomyreport);

src/commons/Parameters.h

@@ -1062,7 +1062,6 @@ class Parameters {
     std::vector<MMseqsParameter*> aggregatetax;
     std::vector<MMseqsParameter*> aggregatetaxweights;
     std::vector<MMseqsParameter*> taxonomy;
-    std::vector<MMseqsParameter*> taxpercontig;
     std::vector<MMseqsParameter*> easytaxonomy;
     std::vector<MMseqsParameter*> createsubdb;
     std::vector<MMseqsParameter*> renamedbkeys;