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Bug: Clustering disparity between the same gene in query and target genomes

Status: Open.

#23 In soedinglab/spacedust;

· atsh00001 opened on Jun 26, 2026

Bug Report: Can not allocate entries memory in IndexTable::initMemory persists regardless of available memory and --split settings

Status: Open.

#22 In soedinglab/spacedust;

· Xiewentao17 opened on Feb 27, 2026

Scalability issue: Massive output size (>300GB) with >1000 genomes

Status: Open.

#21 In soedinglab/spacedust;

· chengwbTOT opened on Jan 8, 2026

step-by-step scripts for the example data

Status: Open.

#20 In soedinglab/spacedust;

· BinhongLiu opened on Dec 30, 2025

How to cluster and filter gene clusters across many genomes to infer their distribution

Status: Open.

#19 In soedinglab/spacedust;

· JoshPhd opened on Dec 24, 2025

Problem of --cluster-size 1

Status: Open.

#17 In soedinglab/spacedust;

· lalintao opened on Nov 27, 2025

Error occurred when mapping the protein sequence to the structure database

Status: Open.

#16 In soedinglab/spacedust;

· longlu428 opened on Nov 19, 2025

comparison accuracy of "spacedust clustersearch" decreases significantly when the targetdb increases

Status: Open.

#15 In soedinglab/spacedust;

· DUANZIHAOO opened on Nov 14, 2025

How can I create a custom reference database

Status: Open.

#14 In soedinglab/spacedust;

· neptuneyt opened on Nov 1, 2025

No datafile could be found for /Database/FoldSeekDB/PDB100_member_to_set!

Status: Open.

#13 In soedinglab/spacedust;

· neptuneyt opened on Nov 1, 2025

Reduction of redundancy in gene clusters

Status: Open.

#12 In soedinglab/spacedust;

· lalintao opened on Oct 28, 2025

Whether spacedust supports MMseqs2-GPU version？

Status: Open.

#11 In soedinglab/spacedust;

· zhaorui-bi opened on Oct 8, 2025