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Remove unused tflite libraries that cause a crash in colab
1 parent 9712f2f commit de5ab5f

3 files changed

Lines changed: 3 additions & 3 deletions

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AlphaFold2.ipynb

Lines changed: 1 addition & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -151,7 +151,7 @@
151151
" os.system(\"ln -s /usr/local/lib/python3.*/dist-packages/colabfold colabfold\")\n",
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" os.system(\"ln -s /usr/local/lib/python3.*/dist-packages/alphafold alphafold\")\n",
153153
" # hack to fix TF crash\n",
154-
" os.system(\"rm -f /usr/local/lib/python3.*/dist-packages/tensorflow/core/kernels/libtfkernel_sobol_op.so\")\n",
154+
" os.system(\"rm -f /usr/local/lib/python3.*/dist-packages/tensorflow/core/kernels/libtfkernel_sobol_op.so /usr/local/lib/python3.*/dist-packages/tensorflow/lite/python/*/*.so\")\n",
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" os.system(\"touch COLABFOLD_READY\")\n",
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"\n",
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"if USE_AMBER or USE_TEMPLATES:\n",

Boltz1.ipynb

Lines changed: 1 addition & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -249,7 +249,7 @@
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" os.system(\"ln -s /usr/local/lib/python3.*/dist-packages/colabfold colabfold\")\n",
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" os.system(\"ln -s /usr/local/lib/python3.*/dist-packages/alphafold alphafold\")\n",
251251
" # hack to fix TF crash\n",
252-
" os.system(\"rm -f /usr/local/lib/python3.*/dist-packages/tensorflow/core/kernels/libtfkernel_sobol_op.so\")\n",
252+
" os.system(\"rm -f /usr/local/lib/python3.*/dist-packages/tensorflow/core/kernels/libtfkernel_sobol_op.so /usr/local/lib/python3.*/dist-packages/tensorflow/lite/python/*/*.so\")\n",
253253
" os.system(\"touch COLABFOLD_READY\")\n",
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"\n",
255255
"if not os.path.isfile(\"BOLZ_READY\"):\n",

batch/AlphaFold2_batch.ipynb

Lines changed: 1 addition & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -136,7 +136,7 @@
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" ln -s /usr/local/lib/python3.*/dist-packages/colabfold colabfold\n",
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" ln -s /usr/local/lib/python3.*/dist-packages/alphafold alphafold\n",
138138
" # hack to fix TF crash\n",
139-
" rm -f /usr/local/lib/python3.*/dist-packages/tensorflow/core/kernels/libtfkernel_sobol_op.so\n",
139+
" rm -f /usr/local/lib/python3.*/dist-packages/tensorflow/core/kernels/libtfkernel_sobol_op.so /usr/local/lib/python3.*/dist-packages/tensorflow/lite/python/*/*.so\n",
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" touch COLABFOLD_READY\n",
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"fi\n",
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"\n",

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