add cyclic support

Author: sokrypton

AlphaFold2.ipynb

@@ -272,6 +272,7 @@
         "num_recycles = \"auto\" #@param [\"auto\", \"0\", \"1\", \"3\", \"6\", \"12\", \"24\", \"48\"]\n",
         "recycle_early_stop_tolerance = \"auto\" #@param [\"auto\", \"0.0\", \"0.5\", \"1.0\"]\n",
         "#@markdown - if `auto` will use `num_recycles=20 tol=0.5` for `model_type=alphafold2_multimer_v3`, else `num_recyles=3 tol=0.5`\n",
+        "set_cyclic_offset = False #@param {type:\"boolean\"}\n",
         "\n",
         "#@markdown ### Sample settings\n",
         "max_msa = \"auto\" #@param [\"auto\", \"512:1024\", \"256:512\", \"64:128\", \"32:64\", \"16:32\"]\n",
@@ -384,6 +385,7 @@
         "    inputs_callback=inputs_callback,\n",
         "    outputs_callback=outputs_callback,\n",
         "    save_recycles=save_recycles,\n",
+        "    cyclic=set_cyclic_offset\n",
         ")\n",
         "results_zip = f\"{jobname}.result.zip\"\n",
         "os.system(f\"zip -r {results_zip} {jobname}\")\n",