Description:
I am running Boltz2 on an Ubuntu server and using:
boltz predict input.yaml --use_msa_server --use_potentials --accelerator gpu --devices 1 --no_kernels
Boltz fails during MSA generation when it tries to contact the default ColabFold MSA API:
https://api.colabfold.com
The error is a connection timeout before the MSA job is submitted/completed.
Boltz source/default behavior:
--use_msa_server uses:
https://api.colabfold.com
In the installed Boltz source, requests to the MSA server use a short timeout:
timeout=6.02
with retries.
Description:
I am running Boltz2 on an Ubuntu server and using:
boltz predict input.yaml --use_msa_server --use_potentials --accelerator gpu --devices 1 --no_kernels
Boltz fails during MSA generation when it tries to contact the default ColabFold MSA API:
https://api.colabfold.com
The error is a connection timeout before the MSA job is submitted/completed.
Boltz source/default behavior:
--use_msa_server uses:
https://api.colabfold.com
In the installed Boltz source, requests to the MSA server use a short timeout:
timeout=6.02
with retries.