Commit 56814c7
committed
update to sgn-416.0. Fix an issue with the trial image section when there are a lot of images; add a generic analysis_result stock type for analyses that are not accession, plot, or tissue_sample specific; fix an issue with a BrAPI year field; add multi-line filter for wizard; add a script to transform excel-based ontologies to obo files; fix issues with Sankey code library; allow curators to un-obsolete obsoleted stocks; add a separate page for transcriptomics data; fix an issue with the genotype download on the generic download page.
1 parent 74fc36f commit 56814c7
2 files changed
Lines changed: 2 additions & 2 deletions
- genoDataFilter/DESCRIPTION+6-6
- genoDataFilter/Meta/Rd.rds
- genoDataFilter/Meta/data.rds
- genoDataFilter/Meta/features.rds
- genoDataFilter/Meta/hsearch.rds
- genoDataFilter/Meta/links.rds
- genoDataFilter/Meta/nsInfo.rds
- genoDataFilter/Meta/package.rds
- genoDataFilter/R/genoDataFilter.rdb
- genoDataFilter/R/genoDataFilter.rdx
- genoDataFilter/data/Rdata.rdb
- genoDataFilter/data/Rdata.rds
- genoDataFilter/data/Rdata.rdx
- genoDataFilter/help/aliases.rds
- genoDataFilter/help/genoDataFilter.rdb
- genoDataFilter/help/genoDataFilter.rdx
- genoDataFilter/help/paths.rds
- genoDataFilter/html/00Index.html+1-1
- bin/convert_td_to_obo.pl+260
- db/00190/AddAnalysisResultStockType.pm+86
- js/source/legacy/CXGN/Stock.js+14-3
- js/source/legacy/d3/d3-sankey/LICENSE-27
- js/source/legacy/d3/d3-sankey/README.md-249
- js/source/legacy/d3/d3-sankey/dist/d3-sankey.js-425
- js/source/legacy/d3/d3-sankey/dist/d3-sankey.min.js-2
- js/source/legacy/d3/d3-sankey/package.json-72
- js/source/legacy/d3/d3-sankey/src/align.js-23
- js/source/legacy/d3/d3-sankey/src/constant.js-5
- js/source/legacy/d3/d3-sankey/src/index.js-3
- js/source/legacy/d3/d3-sankey/src/sankey.js-369
- js/source/legacy/d3/d3-sankey/src/sankeyLinkHorizontal.js-15
- js/source/legacy/jqueryfileupload/CONTRIBUTING.md-42
- js/source/legacy/jqueryfileupload/README.md-93
- js/source/legacy/jqueryfileupload/blueimp-file-upload-jquery-ui.jquery.json-51
- js/source/legacy/jqueryfileupload/cors/jquery.postmessage-transport.js-117
- js/source/legacy/jqueryfileupload/cors/jquery.xdr-transport.js-87
- js/source/legacy/jqueryfileupload/cors/postmessage.html-75
- js/source/legacy/jqueryfileupload/cors/result.html-24
- js/source/legacy/jqueryfileupload/css/jquery.fileupload-ui-noscript.css-27
- js/source/legacy/jqueryfileupload/css/jquery.fileupload-ui.css-106
- js/source/legacy/jqueryfileupload/css/style.css-87
- js/source/legacy/jqueryfileupload/fileupload-jui.js-138
- js/source/legacy/jqueryfileupload/fileupload-ui.js-647
- js/source/legacy/jqueryfileupload/fileupload.js-1.1k
- js/source/legacy/jqueryfileupload/fonts/glyphicons-halflings-regular.eot
- js/source/legacy/jqueryfileupload/fonts/glyphicons-halflings-regular.svg-228
- js/source/legacy/jqueryfileupload/fonts/glyphicons-halflings-regular.ttf
- js/source/legacy/jqueryfileupload/fonts/glyphicons-halflings-regular.woff
- js/source/legacy/jqueryfileupload/iframe-transport.js-185
- js/source/legacy/jqueryfileupload/img/loading.gif
- js/source/legacy/jqueryfileupload/img/progressbar.gif
- js/source/legacy/jqueryfileupload/index.html-235
- js/source/legacy/jqueryfileupload/jquery.fileupload-fp.js-223
- js/source/legacy/jqueryfileupload/jquery.iframe-transport.js-185
- js/source/legacy/jqueryfileupload/main.js-99
- js/source/legacy/jqueryfileupload/package.json-56
- js/source/legacy/jqueryfileupload/vendor/jquery.ui.widget.js-528
- js/source/legacy/jqueryfileupload/vendor/ui-widget.js-528
- js/source/legacy/solGS/pca.js+23-10
- js/source/modules/wizard-search.js+50-10
- lib/CXGN/Analysis.pm+32-9
- lib/CXGN/Analysis/AnalysisCreate.pm+102-5
- lib/CXGN/BrAPI/v1/Studies.pm+1-1
- lib/CXGN/BrAPI/v2/Studies.pm+7-4
- lib/CXGN/Phenotypes/PhenotypeMatrix.pm+14-5
- lib/CXGN/Phenotypes/Search/Native.pm+114-10
- lib/CXGN/Stock.pm+1-1
- lib/CXGN/Stock/Search.pm+11
- lib/CXGN/Trial/TrialDesignStore/AbstractTrial.pm+6-1
- lib/CXGN/Trial/TrialDesignStore/Analysis.pm+2-1
- lib/CXGN/Trial/TrialLayout/AbstractLayout.pm+121-61
- lib/CXGN/Trial/TrialLayout/Analysis.pm+5-5
- lib/CXGN/Trial/TrialLayoutDownload.pm+27-33
- lib/SGN/Controller/AJAX/Analysis.pm+24-4
- lib/SGN/Controller/AJAX/Search/Image.pm+2-1
- lib/SGN/Controller/AJAX/Search/Stock.pm+3-2
- lib/SGN/Controller/AJAX/Stock.pm+1-1
- lib/SGN/Controller/AJAX/TrialMetadata.pm+55-8
- lib/SGN/Controller/BreedersToolbox.pm+26
- lib/SGN/Controller/solGS/pcaSave.pm+50-26
- mason/breeders_toolbox/breeder_search_page.mas+21-9
- mason/breeders_toolbox/download.mas+1-1
- mason/breeders_toolbox/manage_phenotyping.mas+1-1
- mason/breeders_toolbox/manage_transcriptomics.mas+24
- mason/breeders_toolbox/trial/field_trial_from_field_trial_linkage.mas+2-1
- mason/image/plot_images.mas+1
- mason/page/detail_page_2_col_section.mas+12-1
- mason/search/images.mas+1
- mason/search/stocks.mas+52-31
- mason/stock/delete.mas+11-3
- mason/stock/index.mas+3-3
- mason/tools/transcriptomics/manage_transcriptomics_main.mas+82
- mason/transformation/obsolete_stock_dialog.mas+4-5
- static/css/wizard.css+76-52
- t/data/fixture/cxgn_fixture.sql+339-34
- t/selenium2/breeders/breeder_search.t+97-66
- t/selenium2/solgs/pca.t+73
- t/unit_mech/AJAX/TrialImages.t+1-1
0 commit comments