Commit 9ac5f18
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Update to sgn-452.0. Fixes an issue with a repetitive measurement download; improve the dialog that adds attributes to trait variables, including preset pull down menus for certain variable attributes; adds support for custom plot order in trial download; adds an interface to edit individual phenotypic values after upload; adds improvements to intercropping and a manual section about intercropping; adds improvements to marker metadata; fixes an issue with the upload of phenotype spreadsheets (simple format without timestamps); fixes an issue with the display of trial analysis results and the fieldmap.
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- db/00205/UpdateTraitsViewForMultipleTraitOntologies.pm+87
- docs/404.html+16-7
- docs/BreedbaseManual.pdf
- docs/BreedbaseManual.tex+134-36
- docs/Using-Field-Book-with-BreedBase.html+16-7
- docs/assets/images/intercropping_fieldmap_tooltip.png
- docs/assets/images/intercropping_phenotype_download.png
- docs/assets/images/intercropping_plots_table.png
- docs/assets/images/intercropping_trait_search.png
- docs/basic-website-usage.html+16-7
- docs/data-analysis-tools.html+16-7
- docs/index.html+17-8
- docs/managing-accessions.html+16-7
- docs/managing-barcodes.html+16-7
- docs/managing-breeding-programs.html+16-7
- docs/managing-crosses.html+16-7
- docs/managing-downloads.html+16-7
- docs/managing-drone-imagery.html+16-7
- docs/managing-field-trials.html+144-32
- docs/managing-genotyping-plates.html+16-7
- docs/managing-high-dimensional-phenotyping-data.html+16-7
- docs/managing-images.html+16-7
- docs/managing-locations.html+16-7
- docs/managing-observation-variables.html+32-25
- docs/managing-odk-data-collection.html+16-7
- docs/managing-outliers-in-dataset.html+16-7
- docs/managing-phenotypic-data.html+16-7
- docs/managing-populations.html+16-7
- docs/managing-seed-lots.html+16-7
- docs/managing-sequence-metadata.html+16-7
- docs/managing-spectral-data.html+16-7
- docs/managing-tissue-samples.html+16-7
- docs/managing-user-roles.html+16-7
- docs/managing-vcf-data.html+16-7
- docs/r_markdown_docs/BreedbaseManual.log+351-284
- docs/r_markdown_docs/assets/images/intercropping_fieldmap_tooltip.png
- docs/r_markdown_docs/assets/images/intercropping_phenotype_download.png
- docs/r_markdown_docs/assets/images/intercropping_plots_table.png
- docs/r_markdown_docs/assets/images/intercropping_trait_search.png
- docs/r_markdown_docs/managing_field_trials.Rmd+62-2
- docs/search_index.json+1-1
- docs/searching-the-database.html+16-7
- docs/using-the-label-designer.html+16-7
- docs/vector-viewer.html+16-7
- js/source/legacy/solGS/analysisSelect.js+3-3
- js/source/legacy/solGS/correlation.js+2-2
- js/source/legacy/solGS/kinship.js+6-6
- lib/CXGN/BrAPI/v2/Scales.pm+7-4
- lib/CXGN/Genotype/ParseUpload.pm+8
- lib/CXGN/Genotype/ParseUpload/Plugin/MarkerMetadata.pm+87-21
- lib/CXGN/Genotype/Protocol.pm+146-23
- lib/CXGN/Phenotype.pm+1-1
- lib/CXGN/Phenotypes/ParseUpload/Plugin/PhenotypeSpreadsheetSimpleGeneric.pm+1-1
- lib/CXGN/Phenotypes/StorePhenotypes.pm+8-8
- lib/CXGN/Trial/Download.pm+3
- lib/CXGN/Trial/Download/Plugin/TrialLayoutCSV.pm+4-1
- lib/CXGN/Trial/Download/Plugin/TrialLayoutExcel.pm+4-1
- lib/CXGN/Trial/TrialLayout.pm+2
- lib/CXGN/Trial/TrialLayout/AbstractLayout.pm+23
- lib/CXGN/Trial/TrialLayoutDownload.pm+22-1
- lib/CXGN/Trial/TrialLayoutDownload/PlantLayout.pm+17-2
- lib/CXGN/Trial/TrialLayoutDownload/PlotLayout.pm+18-2
- lib/CXGN/Trial/TrialLayoutDownload/SubplotLayout.pm+17-2
- lib/CXGN/Trial/TrialLayoutDownload/TissueSampleLayout.pm+17-2
- lib/SGN/Controller/AJAX/GenotypingProtocol.pm+141-13
- lib/SGN/Controller/AJAX/Onto.pm+1-1
- lib/SGN/Controller/AJAX/PhenotypesUpload.pm+93-1
- lib/SGN/Controller/BreedersToolbox/Trial.pm+7-2
- lib/SGN/Controller/solGS/Kinship.pm+2-2
- mason/breeders_toolbox/genotyping_protocol/marker_metadata.mas+144-4
- mason/breeders_toolbox/genotyping_trials/upload_genotyping_data_dialogs.mas+13-5
- mason/breeders_toolbox/trial.mas+2-2
- mason/breeders_toolbox/trial/download_layout_interface_dialog.mas+55-37
- mason/breeders_toolbox/trial/trial_raw_data.mas+154-25
- mason/chado/cvterm.mas+1-1
- mason/chado/cvtermprops.mas+124-45
- mason/page/detail_page_2_col_section.mas+1-1
- mason/tools/trait_designer.mas+19-19
- sgn_test.conf+4
- t/data/genotype_data/marker_metadata.csv+4
- t/data/trial/trial_layout_example_intercropping.csv+9
- t/data/trial/trial_layout_example_intercropping.xls
- t/data/trial/trial_layout_example_intercropping.xlsx
- t/data/trial/upload_phenotyping_spreadsheet_intercropping.xlsx
- t/selenium2/breeders/upload_phenotype/upload_phenotyping_spreadsheet.t+91-1
- t/selenium2/solgs/correlation.t+13-13
- t/unit_fixture/CXGN/Trial/TrialIntercropping.t+715
- t/unit_fixture/CXGN/Uploading/Phenotype.t+63-13
- t/unit_mech/AJAX/MarkerMetadata.t+180
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