Commit ee5de68
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fixes the stock merge function for stocks with large pedigrees by not parsing the entire pedigree, just retrieving the parents; fixes a bug in the stock merge that resulted in duplicate attributes when they were present in both stocks; fixes issues with cached data when analyses and datasets are being deleted; removes redundant code in genotyping plate functions; sort labels in lists correctly in label designer; relax constraints on timestamps in phenotyping simple format files; fix an issue on the summary section of the regeneration phenotyping page that caused a data table error.
1 parent 7a11f45 commit ee5de68
2 files changed
Lines changed: 2 additions & 2 deletions
- R/solGS/hclustering.r+1
- R/solGS/kclustering.r+5
- R/solGS/rrblup_gblup_gs.r+14-3
- js/source/legacy/solGS/anova.js+8-3
- js/source/legacy/solGS/clearCache.js+27
- js/source/legacy/solGS/cluster.js+42-8
- js/source/legacy/solGS/correlation.js+21-2
- js/source/legacy/solGS/geneticGain.js+6
- js/source/legacy/solGS/kinship.js+29-20
- js/source/legacy/solGS/listTypeSelectionPopulation.js+92-24
- js/source/legacy/solGS/pca.js+23-12
- js/source/legacy/solGS/selectMenu.js+24-10
- js/source/legacy/solGS/selectionIndex.js+7
- js/source/legacy/solGS/solGS.js+2-1
- lib/CXGN/Phenotypes/ParseUpload/Plugin/PhenotypeSpreadsheetSimpleGeneric.pm+2-2
- lib/CXGN/Stock.pm+160-23
- lib/CXGN/Trial/TrialLayoutDownload/GenotypingPlateLayout.pm+1-5
- lib/SGN/Controller/AJAX/Dataset.pm+20-6
- lib/SGN/Controller/AJAX/H2.pm+43-21
- lib/SGN/Controller/AJAX/LabelDesigner.pm+31-5
- lib/SGN/Controller/AJAX/Stock.pm+8-57
- lib/SGN/Controller/AJAX/TrackingActivity.pm+1-2
- lib/SGN/Controller/AJAX/TrialMetadata.pm+9
- lib/SGN/Controller/solGS/AnalysisQueue.pm+9-15
- lib/SGN/Controller/solGS/AnalysisSave.pm+1-1
- lib/SGN/Controller/solGS/Anova.pm+75-31
- lib/SGN/Controller/solGS/AsyncJob.pm+15-14
- lib/SGN/Controller/solGS/Cluster.pm+61-30
- lib/SGN/Controller/solGS/Correlation.pm+44-26
- lib/SGN/Controller/solGS/Dataset.pm+1-1
- lib/SGN/Controller/solGS/Download.pm-1
- lib/SGN/Controller/solGS/Files.pm+267-376
- lib/SGN/Controller/solGS/Gebvs.pm+17-10
- lib/SGN/Controller/solGS/Histogram.pm+1-1
- lib/SGN/Controller/solGS/Kinship.pm+151-17
- lib/SGN/Controller/solGS/List.pm+4-4
- lib/SGN/Controller/solGS/SelectionIndex.pm+51-24
- lib/SGN/Controller/solGS/Trait.pm+3-24
- lib/SGN/Controller/solGS/Utils.pm+3-4
- lib/SGN/Controller/solGS/clearCache.pm+208
- lib/SGN/Controller/solGS/combinedTrials.pm+12-9
- lib/SGN/Controller/solGS/gebvPhenoRegression.pm+4-3
- lib/SGN/Controller/solGS/gebvsSave.pm+2-3
- lib/SGN/Controller/solGS/geneticGain.pm+11-8
- lib/SGN/Controller/solGS/pca.pm+44-17
- lib/SGN/Controller/solGS/pcaSave.pm+1-1
- lib/SGN/Controller/solGS/solGS.pm+14-17
- lib/solGS/AnalysisReport.pm+1-1
- mason/solgs/tools/anova/analysis.mas+5-2
- mason/solgs/tools/base.mas+1-1
- t/lib/SGN/Test/solGSData.pm+49-29
- t/selenium2/solgs/anova.t+12-10
- t/selenium2/solgs/combine_trials.t+16-14
- t/selenium2/solgs/correlation.t+22-22
- t/selenium2/solgs/genetic_gain.t+3-2
- t/selenium2/solgs/hcluster.t+5-6
- t/selenium2/solgs/heritability.t+40-74
- t/selenium2/solgs/kcluster.t+693-1.4k
- t/selenium2/solgs/kinship.t+59-32
- t/selenium2/solgs/list_type_training_pop.t+20-16
- t/selenium2/solgs/pca.t+38-38
- t/selenium2/solgs/selection_index.t+5-4
- t/selenium2/solgs/solgs.t+6-4
- t/unit_fixture/CXGN/Stock/MergeStock.t+21-6
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