spatial-model-editor.github.io/src/content/index.yml at main · spatial-model-editor/spatial-model-editor.github.io · GitHub

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page_title: Spatial Model Editor

page_blurb: >
  A user friendly GUI editor to create and edit spatial
  SBML models of bio-chemical reactions and simulate them
  using the dune-copasi solver for reaction-diffusion systems.

# icon can be any icon name from https://icons.getbootstrap.com/#icons

cards:
  - title: Documentation
    icon: bi-book
    url: "https://spatial-model-editor.readthedocs.io"
    links:
      "Spatial Model Editor": https://spatial-model-editor.readthedocs.io/en/stable/quickstart/get-started.html
      "sme (Python interface)": https://spatial-model-editor.readthedocs.io/en/stable/sme/sme.html
      "sme-contrib (Python extras)": https://sme-contrib.readthedocs.io
  - title: Python interface
    icon: bi-braces
    url: "https://pypi.org/project/sme"
    links:
      "sme": https://pypi.org/project/sme
      "sme-contrib": https://pypi.org/project/sme-contrib
      "Try it online": https://colab.research.google.com/github/spatial-model-editor/spatial-model-editor/blob/main/docs/sme/notebooks/getting_started.ipynb
  - title: Features
    icon: bi-cpu
    url: "features.html"
    links:
      "DuneCopasi solver": features.html#dune
      "Mesh generation": features.html#mesh
      "Parameter fitting": features.html#opt
  - title: Examples
    icon: bi-collection-play
    url: "examples.html"
    links:
      "Simulation Video": examples.html#grayscott
  - title: Source Code
    icon: bi-github
    url: "https://github.com/spatial-model-editor"
    links:
      "Spatial Model Editor": https://github.com/spatial-model-editor/spatial-model-editor
      "sme-contrib": https://github.com/spatial-model-editor/sme-contrib
      "MIT License": https://github.com/spatial-model-editor/spatial-model-editor/blob/master/LICENSE