README.md

spatial-model-editor.github.io/toy-models

2d toy model

A 2d toy model starting from 2d segmented cells

• Online slides (generated from jupyter notebook below)
• Jupyter notebook
• SBML model

3d toy model

A 3d toy model starting from 3d segmented cells

• Online slides (generated from jupyter notebook below)
• Jupyter notebook
• SBML model

3d multiple model parameter fitting

Fitting parameters to multiple 3d toy models

• Online slides (generated from jupyter notebook below)
• Jupyter notebook
• SBML model

The SBML models can be opened, modified and simulated using Spatial Model Editor