Is it possible that you labeled VCOM wrong in the timing diagrams? I think you meant MOD. In the GBA service manual, VCOM is not connected to the AGB CPU. It's not a digital signal. But MOD is missing in your diagrams, so I think you may have shifted a line lower by accident when reading your pin table. In the pin table, the note "Active on positive edge" on pin 29 (VCOM) belongs to pin 28 (MOD) I think.
Is it possible that you labeled VCOM wrong in the timing diagrams? I think you meant MOD. In the GBA service manual, VCOM is not connected to the AGB CPU. It's not a digital signal. But MOD is missing in your diagrams, so I think you may have shifted a line lower by accident when reading your pin table. In the pin table, the note "Active on positive edge" on pin 29 (VCOM) belongs to pin 28 (MOD) I think.