chore: add codex instructions guide (#147)

Add codex instructions file for customized and better codex generation.

Author: robodev-r2d2

.github/codex-instructions.md

@@ -0,0 +1,239 @@
+# .github/codex-instructions.md
+
+> **Scope:** These instructions tune our **Codex** code-generation agent (LLM via API/CLI) for this monorepo. They are **authoritative**: follow them over generic best practices. Output must compile, pass linters/tests, and fit our structure.
+
+---
+
+## 1) Repository at a glance
+
+* **Monorepo:** Python backends + Vue 3/TypeScript frontend.
+* **Structure:**
+
+  * `libs/` – reusable Python packages (APIs, domain/services, repositories, schemas, utils)
+  * `services/` – thin Python apps composing `libs`; Vue/Nx frontend
+  * `infrastructure/` – Helm/Tilt/K3d, Terraform, values under `infrastructure/rag/values.yaml`
+  * `docs/` – docs & UI customization
+* **Config:** Env-driven via `.env` (dev tooling only). Never hardcode secrets.
+
+> **Rule of thumb:** Business logic lives in **`libs`**. **`services`** only do bootstrapping, DI, routing, and wiring.
+
+---
+
+## 2) Languages & toolchain
+
+* **Python:** 3.13, **FastAPI**, **Pydantic v2**, **Poetry**
+* **Style/Quality:** `black` (line length **120**), `isort` (profile `black`), `flake8` (plugins), NumPy docstrings, type hints (PEP 484), absolute imports only
+* **Testing:** `pytest` (+ coverage), optional `pytest-asyncio` for async code
+* **Frontend:** Vue 3, TypeScript, Vite, Nx, Tailwind, Pinia, Vue I18n (Vitest + Cypress; ESLint)
+
+---
+
+## 3) Codex behavior (important)
+
+* **Do not invent** secrets/URLs/paths. Use placeholders and `TODO:` comments.
+* **Prefer libs over services:** Add APIs/logic in `libs/*`, wire in `services/*` (keep `main.py` thin: app import + container registration).
+* **Always emit tests** with new Python code (≥1 happy path + ≥1 edge case). Keep unit tests isolated and fast.
+* **Ask via comments if uncertain:** Start the diff with a short `# Assumptions:` block.
+* **Respect performance & readability:** Small cohesive functions, avoid deep nesting/complexity.
+
+---
+
+## 4) Output contract
+
+When asked to modify or add code, follow **one** of these formats:
+
+* **Single file (new):**
+
+  ```md
+  ## path: libs/<pkg>/src/<pkg>/module.py
+  ```
+
+  ```python
+  # file content here
+  ```
+
+* **Single file (edit):** provide a **unified diff**:
+
+  ```diff
+  --- a/libs/<pkg>/src/<pkg>/module.py
+  +++ b/libs/<pkg>/src/<pkg>/module.py
+  @@
+  - old line
+  + new line
+  ```
+
+* **Multiple files:** repeat the above per file, in logical order (libs first, then services, then tests).
+
+* **Test plan:** end with a short block:
+
+  ```txt
+  Build/Test
+  - poetry install
+  - pytest -q --maxfail=1 --cov
+  - black . && isort . && flake8
+  ```
+
+---
+
+## 5) Python specifics
+
+### Typing & style
+
+* Use modern typing (`list[str]`, `dict[str, Any]`), avoid `Any` unless necessary.
+* NumPy-style docstrings for public APIs. No wildcard imports. **Absolute imports only.**
+
+### FastAPI
+
+* Endpoints are **thin**; DI via `Depends`/container; no business logic in routers.
+* Every route defines `response_model=...` and sanitizes outputs.
+* Centralize exception mapping; never leak stack traces in prod.
+* Prefer **async** endpoints for I/O-bound work.
+
+### Validation & config
+
+* **Pydantic v2**: use `field_validator`/`model_validator`; strict models at boundaries.
+* **Configuration:** use `pydantic-settings` for environment-driven settings. `.env` is dev-only (Tilt/tests). Do not auto-load `.env` in production app code.
+
+### HTTP & concurrency
+
+* Use `httpx.AsyncClient` with explicit timeouts and retry/backoff. No `requests` in async code.
+* Never use `time.sleep()`; use `asyncio.sleep()` (or anyio) in async contexts.
+
+### Repositories & services
+
+* Repositories are ports/adapters for DB/HTTP/queues. Services depend on repositories; routers depend on services.
+* Transactions via context manager; avoid autocommit. Do not use raw SQL with f-strings.
+
+### Logging
+
+* Use `logging` (or `structlog`) with structured/contextual fields (`event`, `service`, `request_id`). No PII/secrets in logs.
+
+### File layout for new Python code
+
+* `libs/<package>/src/<package>/...` → APIs, services, repositories, schemas, utils
+* `libs/<package>/tests/` → tests for the above
+* `services/<service>/` → bootstrap, DI container, runtime config
+
+---
+
+## 6) Testing
+
+* `pytest` with fixtures and mocks (`unittest.mock`, `pytest-mock`). No real network in unit tests; mock `httpx` (e.g., `respx`).
+* Aim for **high coverage on core libs**. Mark slow tests with `@pytest.mark.slow`.
+* Suggested `pytest.ini`:
+
+  ```ini
+  [pytest]
+  addopts = -q --strict-markers --strict-config --maxfail=1 --cov=libs --cov-report=term-missing
+  markers =
+      slow: marks tests as slow (deselect with '-m "not slow"')
+  asyncio_mode = strict
+  ```
+
+---
+
+## 7) Frontend quick rules
+
+* Use `<script setup lang="ts">` + Composition API. Strong typing (avoid `any`).
+* State with **Pinia**; i18n with **Vue I18n**. Keep components small/presentational; move logic to composables/stores.
+* Use Tailwind utilities; avoid inline styles. Unit tests with **Vitest**; E2E with **Cypress**.
+* Use tsconfig path aliases (e.g., `@shared/utils`); expose stable public APIs via `index.ts` in libs.
+
+---
+
+## 8) Anti‑patterns (forbidden)
+
+* Business logic in FastAPI routers or Vue components
+* Relative imports; wildcard imports; raw SQL with f-strings
+* `requests` in async code; `time.sleep()` in app/tests
+* Logging secrets/PII; exposing stack traces to clients
+
+---
+
+## 9) Examples Codex should imitate
+
+**Pydantic v2 model (NumPy docstring):**
+
+```python
+"""
+User model.
+
+Parameters
+----------
+id : str
+    User ID.
+name : str
+    Full name.
+active : bool
+    Whether the user is active.
+"""
+from pydantic import BaseModel, field_validator
+
+class User(BaseModel):
+    id: str
+    name: str
+    active: bool = True
+
+    @field_validator("name")
+    @classmethod
+    def not_empty(cls, v: str) -> str:
+        if not v.strip():
+            raise ValueError("name must not be empty")
+        return v
+```
+
+**Router + DI outline (service stays thin):**
+
+```python
+from fastapi import APIRouter, Depends
+from .schemas import User
+from ..services.user_service import UserService
+from ..container import get_user_service
+
+router = APIRouter(prefix="/users", tags=["users"])
+
+@router.get("/", response_model=list[User])
+async def list_users(svc: UserService = Depends(get_user_service)):
+    return await svc.list_users()
+```
+
+**httpx AsyncClient (timeouts + retry/backoff skeleton):**
+
+```python
+import httpx
+from tenacity import retry, stop_after_attempt, wait_exponential
+
+DEFAULT_TIMEOUT = httpx.Timeout(5.0, connect=2.0)
+
+@retry(wait=wait_exponential(multiplier=0.2, max=5), stop=stop_after_attempt(3))
+async def fetch_json(url: str) -> dict:
+    async with httpx.AsyncClient(timeout=DEFAULT_TIMEOUT) as client:
+        resp = await client.get(url)
+        resp.raise_for_status()
+        return resp.json()
+```
+
+---
+
+## 10) Review & quality gates
+
+* Python: run `black`, `isort`, `flake8`, and `pytest --cov` before PR.
+* Frontend: run ESLint + Vitest; add Cypress flows as needed.
+* Keep PRs small and focused; update docs and `.env.template` when adding config.
+
+---
+
+## 11) Handy prompts for this repo
+
+* "Create a router in `libs/rag-core-api` for collections (list/create/delete) and wire it in `services/rag-backend`."
+* "Add Pydantic settings for S3 credentials and inject into the admin backend repository."
+* "Generate a Vue component using Pinia that renders chat messages and emits an event on send, with Vitest tests."
+
+---
+
+## 12) Quick checklist (for every Codex suggestion)
+
+* ✅ Fits `libs/` vs `services/` boundaries and file layout
+* ✅ Compiles and passes linters (black/isort/flake8) and tests
+* ✅ Uses Pydantic v2, FastAPI DI, httpx async
+* ✅ No secrets/PII in code or logs; no stack traces in client responses