|
1 | 1 | url: https://mc-stan.org/loo/ |
2 | 2 | destination: docs |
3 | 3 | template: |
4 | | - params: |
5 | | - bootswatch: cosmo |
| 4 | + package: pkgdownConfig |
6 | 5 | development: |
7 | 6 | mode: auto |
| 7 | + |
8 | 8 | navbar: |
9 | | - title: loo |
10 | | - left: |
11 | | - - icon: fa-home fa-lg |
12 | | - aria-label: Return to homepage |
13 | | - href: index.html |
14 | | - - text: Vignettes |
15 | | - href: articles/index.html |
16 | | - - text: Functions |
17 | | - href: reference/index.html |
18 | | - - text: News |
19 | | - href: news/index.html |
20 | | - - text: Other Packages |
21 | | - menu: |
22 | | - - text: rstan |
23 | | - href: https://mc-stan.org/rstan |
24 | | - - text: cmdstanr |
25 | | - href: https://mc-stan.org/cmdstanr |
26 | | - - text: rstanarm |
27 | | - href: https://mc-stan.org/rstanarm |
28 | | - - text: bayesplot |
29 | | - href: https://mc-stan.org/bayesplot |
30 | | - - text: shinystan |
31 | | - href: https://mc-stan.org/shinystan |
32 | | - - text: projpred |
33 | | - href: https://mc-stan.org/projpred |
34 | | - - text: rstantools |
35 | | - href: https://mc-stan.org/rstantools |
36 | | - - text: posterior |
37 | | - href: https://mc-stan.org/posterior |
38 | | - - text: Stan |
39 | | - href: https://mc-stan.org |
40 | | - right: |
41 | | - - icon: fa-twitter |
42 | | - aria-label: Visit our Twitter profile |
43 | | - href: https://twitter.com/mcmc_stan |
44 | | - - icon: fa-github |
45 | | - aria-label: View our code on GitHub |
46 | | - href: https://github.com/stan-dev/loo |
47 | | - - icon: fa-users |
48 | | - aria-label: Visit our forums |
49 | | - href: https://discourse.mc-stan.org/ |
50 | | -home: |
51 | | - links: |
52 | | - - text: Ask a question |
53 | | - href: https://discourse.mc-stan.org/ |
| 9 | + title: "loo" |
| 10 | + |
| 11 | + structure: |
| 12 | + left: [home, vignettes, functions, pkgs, news, stan] |
| 13 | + right: [search, bluesky, twitter, forum, github, lightswitch] |
| 14 | + |
| 15 | + components: |
| 16 | + home: |
| 17 | + icon: fa-home fa-lg |
| 18 | + href: index.html |
| 19 | + vignettes: |
| 20 | + text: Vignettes |
| 21 | + href: articles/index.html |
| 22 | + functions: |
| 23 | + text: Functions |
| 24 | + href: reference/index.html |
| 25 | + pkgs: |
| 26 | + text: Other Packages |
| 27 | + menu: |
| 28 | + - text: rstan |
| 29 | + href: https://mc-stan.org/rstan |
| 30 | + - text: cmdstanr |
| 31 | + href: https://mc-stan.org/cmdstanr |
| 32 | + - text: rstanarm |
| 33 | + href: https://mc-stan.org/rstanarm |
| 34 | + - text: bayesplot |
| 35 | + href: https://mc-stan.org/bayesplot |
| 36 | + - text: shinystan |
| 37 | + href: https://mc-stan.org/shinystan |
| 38 | + - text: projpred |
| 39 | + href: https://mc-stan.org/projpred |
| 40 | + - text: rstantools |
| 41 | + href: https://mc-stan.org/rstantools |
| 42 | + - text: posterior |
| 43 | + href: https://mc-stan.org/posterior |
| 44 | + |
54 | 45 | articles: |
55 | | -- title: Getting started |
56 | | - desc: | |
57 | | - These vignettes demonstrate how to use the **loo** package to perform approximate leave-one-out cross-validation or exact K-fold cross-validation for Bayesian models fit using MCMC, compare models on estimated predictive performance on new data, and weight models for averaging predictive distributions. |
58 | | - contents: |
59 | | - - loo2-example |
60 | | - - loo2-weights |
61 | | - - loo2-with-rstan |
62 | | - - loo2-elpd |
63 | | -- title: Additional topics |
64 | | - desc: | |
65 | | - These vignettes demonstrate how to use the **loo** package for more complicated scenarios including models with non-factorized likelihoods, forecasting models, models fit to very large datasets, and more. |
66 | | - contents: |
67 | | - - loo2-non-factorized |
68 | | - - loo2-lfo |
69 | | - - loo2-large-data |
70 | | - - loo2-moment-matching |
71 | | - - loo2-mixis |
72 | | -- title: Frequently asked questions |
73 | | - contents: |
74 | | - - faq |
| 46 | + - title: Getting started |
| 47 | + desc: | |
| 48 | + These vignettes demonstrate how to use the **loo** package to perform approximate leave-one-out cross-validation or exact K-fold cross-validation for Bayesian models fit using MCMC, compare models on estimated predictive performance on new data, and weight models for averaging predictive distributions. |
| 49 | + contents: |
| 50 | + - loo2-example |
| 51 | + - loo2-weights |
| 52 | + - loo2-with-rstan |
| 53 | + - loo2-elpd |
| 54 | + - title: Additional topics |
| 55 | + desc: | |
| 56 | + These vignettes demonstrate how to use the **loo** package for more complicated scenarios including models with non-factorized likelihoods, forecasting models, models fit to very large datasets, and more. |
| 57 | + contents: |
| 58 | + - loo2-non-factorized |
| 59 | + - loo2-lfo |
| 60 | + - loo2-large-data |
| 61 | + - loo2-moment-matching |
| 62 | + - loo2-mixis |
| 63 | + - title: Frequently asked questions |
| 64 | + contents: |
| 65 | + - faq |
| 66 | + |
75 | 67 | external-articles: |
76 | | -- name: faq |
77 | | - title: Cross-validation FAQ |
78 | | - description: Answers to frequently asked questions about cross-validation and the **loo** package (links to external site). |
79 | | - href: https://users.aalto.fi/~ave/CV-FAQ.html |
80 | | -reference: |
81 | | -- title: Package description, glossary, and included data sets |
82 | | - contents: |
83 | | - - loo-package |
84 | | - - loo-glossary |
85 | | - - loo-datasets |
86 | | -- title: Approximate LOO-CV |
87 | | - desc: | |
88 | | - Approximate LOO-CV, Pareto smoothed importance sampling (PSIS), and diagnostics. |
89 | | - contents: |
90 | | - - loo |
91 | | - - loo_subsample |
92 | | - - loo_approximate_posterior |
93 | | - - loo_moment_match |
94 | | - - loo_moment_match_split |
95 | | - - E_loo |
96 | | - - psis |
97 | | - - ap_psis |
98 | | - - tis |
99 | | - - sis |
100 | | - - importance_sampling |
101 | | - - weights.importance_sampling |
102 | | - - pareto-k-diagnostic |
103 | | -- title: Model comparison weighting/averaging |
104 | | - desc: | |
105 | | - Functions for comparing models and computing model weights via stacking of predictive distributions or pseudo-BMA weighting. |
106 | | - contents: |
107 | | - - loo_compare |
108 | | - - loo_model_weights |
109 | | - - stacking_weights |
110 | | - - pseudobma_weights |
111 | | -- title: Helper functions for K-fold CV |
112 | | - contents: |
113 | | - - kfold_split_random |
114 | | - - kfold_split_stratified |
115 | | - - kfold_split_grouped |
116 | | - - kfold |
117 | | - - elpd |
118 | | -- title: Other functions |
119 | | - contents: |
120 | | - - loo_predictive_metric |
121 | | - - crps |
122 | | - - elpd |
123 | | - - waic |
124 | | - - extract_log_lik |
125 | | - - pointwise |
126 | | - - relative_eff |
127 | | - - gpdfit |
128 | | - - starts_with("example_loglik") |
129 | | - - print.loo |
130 | | - - nobs.psis_loo_ss |
131 | | - - obs_idx |
132 | | - - update.psis_loo_ss |
133 | | -- title: Deprecated functions |
134 | | - contents: |
135 | | - - compare |
136 | | - - psislw |
| 68 | + - name: faq |
| 69 | + title: Cross-validation FAQ |
| 70 | + description: Answers to frequently asked questions about cross-validation and the **loo** package (links to external site). |
| 71 | + href: https://users.aalto.fi/~ave/CV-FAQ.html |
137 | 72 |
|
| 73 | +reference: |
| 74 | + - title: Package description, glossary, and included data sets |
| 75 | + contents: |
| 76 | + - loo-package |
| 77 | + - loo-glossary |
| 78 | + - loo-datasets |
| 79 | + - title: Approximate LOO-CV |
| 80 | + desc: | |
| 81 | + Approximate LOO-CV, Pareto smoothed importance sampling (PSIS), and diagnostics. |
| 82 | + contents: |
| 83 | + - loo |
| 84 | + - loo_subsample |
| 85 | + - loo_approximate_posterior |
| 86 | + - loo_moment_match |
| 87 | + - loo_moment_match_split |
| 88 | + - E_loo |
| 89 | + - psis |
| 90 | + - ap_psis |
| 91 | + - tis |
| 92 | + - sis |
| 93 | + - importance_sampling |
| 94 | + - weights.importance_sampling |
| 95 | + - pareto-k-diagnostic |
| 96 | + - title: Model comparison weighting/averaging |
| 97 | + desc: | |
| 98 | + Functions for comparing models and computing model weights via stacking of predictive distributions or pseudo-BMA weighting. |
| 99 | + contents: |
| 100 | + - loo_compare |
| 101 | + - loo_model_weights |
| 102 | + - stacking_weights |
| 103 | + - pseudobma_weights |
| 104 | + - title: Helper functions for K-fold CV |
| 105 | + contents: |
| 106 | + - kfold_split_random |
| 107 | + - kfold_split_stratified |
| 108 | + - kfold_split_grouped |
| 109 | + - kfold |
| 110 | + - elpd |
| 111 | + - title: Other functions |
| 112 | + contents: |
| 113 | + - loo_predictive_metric |
| 114 | + - crps |
| 115 | + - elpd |
| 116 | + - waic |
| 117 | + - extract_log_lik |
| 118 | + - pointwise |
| 119 | + - relative_eff |
| 120 | + - gpdfit |
| 121 | + - starts_with("example_loglik") |
| 122 | + - print.loo |
| 123 | + - nobs.psis_loo_ss |
| 124 | + - obs_idx |
| 125 | + - update.psis_loo_ss |
| 126 | + - title: Deprecated functions |
| 127 | + contents: |
| 128 | + - compare |
| 129 | + - psislw |
0 commit comments