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upgrading to sundials v6.0.0; adding unmodified sundials library
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‎lib/sundials_6.0.0/.readthedocs.yaml‎

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# .readthedocs.yaml
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# Read the Docs configuration file
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# See https://docs.readthedocs.io/en/stable/config-file/v2.html for details
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# Required
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version: 2
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# Set the version of Python and other tools you might need
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build:
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os: ubuntu-20.04
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tools:
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python: "3.9"
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# Build documentation in the doc/ directory with Sphinx
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sphinx:
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configuration: doc/superbuild/source/conf.py
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# Optionally declare the Python requirements required to build your docs
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python:
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install:
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- requirements: doc/requirements.txt

‎lib/sundials_6.0.0/CHANGELOG.md‎

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‎lib/sundials_6.0.0/CMakeLists.txt‎

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# ---------------------------------------------------------------
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# Programmer(s): Radu Serban, David J. Gardner, Cody J. Balos,
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# and Slaven Peles @ LLNL
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# ---------------------------------------------------------------
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# SUNDIALS Copyright Start
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# Copyright (c) 2002-2021, Lawrence Livermore National Security
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# and Southern Methodist University.
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# All rights reserved.
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#
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# See the top-level LICENSE and NOTICE files for details.
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#
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# SPDX-License-Identifier: BSD-3-Clause
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# SUNDIALS Copyright End
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# ---------------------------------------------------------------
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# Top level CMakeLists.txt for SUNDIALS (for cmake build system)
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# ---------------------------------------------------------------
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# ===============================================================
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# Initial setup.
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# ===============================================================
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cmake_minimum_required(VERSION 3.12)
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# Project SUNDIALS (initially only C supported)
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# sets PROJECT_SOURCE_DIR and PROJECT_BINARY_DIR variables.
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project(SUNDIALS C)
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# Specify the location of additional CMAKE modules
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set(CMAKE_MODULE_PATH
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${PROJECT_SOURCE_DIR}/cmake
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${PROJECT_SOURCE_DIR}/cmake/macros
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${PROJECT_SOURCE_DIR}/cmake/tpl
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)
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# MACRO definitions
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include(SundialsCMakeMacros)
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include(CMakePrintHelpers)
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include(CheckCSourceCompiles)
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include(FindPackageHandleStandardArgs)
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# Set some variables with info on the SUNDIALS project
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set(PACKAGE_BUGREPORT "sundials-users@llnl.gov")
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set(PACKAGE_NAME "SUNDIALS")
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set(PACKAGE_STRING "SUNDIALS 6.0.0")
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set(PACKAGE_TARNAME "sundials")
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# Set SUNDIALS version numbers
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sundials_git_version() # sets SUNDIALS_GIT_VERSION
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message(STATUS "SUNDIALS_GIT_VERSION: ${SUNDIALS_GIT_VERSION}")
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# (use "" for the version label if none is needed)
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set(PACKAGE_VERSION_MAJOR "6")
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set(PACKAGE_VERSION_MINOR "0")
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set(PACKAGE_VERSION_PATCH "0")
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set(PACKAGE_VERSION_LABEL "")
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if(PACKAGE_VERSION_LABEL)
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set(PACKAGE_VERSION
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"${PACKAGE_VERSION_MAJOR}.${PACKAGE_VERSION_MINOR}.${PACKAGE_VERSION_PATCH}-${PACKAGE_VERSION_LABEL}"
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)
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else()
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set(PACKAGE_VERSION
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"${PACKAGE_VERSION_MAJOR}.${PACKAGE_VERSION_MINOR}.${PACKAGE_VERSION_PATCH}"
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)
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endif()
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# Specify the VERSION and SOVERSION for shared libraries
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set(arkodelib_VERSION "5.0.0")
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set(arkodelib_SOVERSION "5")
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set(cvodelib_VERSION "6.0.0")
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set(cvodelib_SOVERSION "6")
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set(cvodeslib_VERSION "6.0.0")
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set(cvodeslib_SOVERSION "6")
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set(idalib_VERSION "6.0.0")
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set(idalib_SOVERSION "6")
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set(idaslib_VERSION "5.0.0")
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set(idaslib_SOVERSION "5")
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set(kinsollib_VERSION "6.0.0")
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set(kinsollib_SOVERSION "6")
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set(cpodeslib_VERSION "0.0.0")
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set(cpodeslib_SOVERSION "0")
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set(nveclib_VERSION "6.0.0")
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set(nveclib_SOVERSION "6")
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set(sunmatrixlib_VERSION "4.0.0")
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set(sunmatrixlib_SOVERSION "4")
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set(sunlinsollib_VERSION "4.0.0")
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set(sunlinsollib_SOVERSION "4")
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set(sunnonlinsollib_VERSION "3.0.0")
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set(sunnonlinsollib_SOVERSION "3")
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set(sundialslib_VERSION
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"${PACKAGE_VERSION_MAJOR}.${PACKAGE_VERSION_MINOR}.${PACKAGE_VERSION_PATCH}"
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)
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set(sundialslib_SOVERSION "${PACKAGE_VERSION_MAJOR}")
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# ===============================================================
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# Initial Setup
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# ===============================================================
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# Prohibit in-source build
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if("${CMAKE_SOURCE_DIR}" STREQUAL "${CMAKE_BINARY_DIR}")
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print_error("In-source build prohibited.")
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endif()
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# Organize targets into folders when using an IDE
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set_property(GLOBAL PROPERTY USE_FOLDERS ON)
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# Get correct build paths automatically, but expose LIBDIR and
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# INCLUDEDIR as a regular cache variable so that a user can more
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# easily see what they were set to by GNUInstallDirs.
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include(GNUInstallDirs)
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mark_as_advanced(CLEAR CMAKE_INSTALL_LIBDIR)
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mark_as_advanced(CLEAR CMAKE_INSTALL_INCLUDEDIR)
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# Suffixes to use for static and shared targets.
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set(_STATIC_LIB_SUFFIX
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"_static"
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CACHE INTERNAL "" FORCE
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)
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set(_SHARED_LIB_SUFFIX
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"_shared"
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CACHE INTERNAL "" FORCE
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)
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# A list of all the alias targets created.
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set(_SUNDIALS_ALIAS_TARGETS ""
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CACHE INTERNAL "" FORCE)
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# ===============================================================
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# Build options to be processed first
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# ===============================================================
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include(SundialsDeprecated)
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include(SundialsBuildOptionsPre)
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# ===============================================================
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# Options for external packages
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# ===============================================================
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include(SundialsTPLOptions)
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# ===============================================================
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# Options for examples
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# ===============================================================
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include(SundialsExampleOptions)
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# ===============================================================
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# Setup compilers
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# ===============================================================
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include(SundialsSetupCompilers)
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# ===============================================================
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# Setup third-party libraries
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# ===============================================================
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include(SundialsSetupTPLs)
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# ===============================================================
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# Build options to be proccessed last
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# ===============================================================
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include(SundialsBuildOptionsPost)
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# ===============================================================
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# At this point all the configuration options are set.
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# Setup the sundials_config.h.
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# ===============================================================
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include(SundialsSetupConfig)
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# ===============================================================
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# Add src and tests; optionally add examples and unit tests.
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# ===============================================================
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# Add selected packages and modules to the build
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add_subdirectory(src)
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# Add selected examples to the build
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if(_BUILD_EXAMPLES)
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include(SundialsSetupTesting)
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add_subdirectory(examples)
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endif()
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# Add benchmarks to the build
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if(BUILD_BENCHMARKS)
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add_subdirectory(benchmarks)
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endif()
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# ===============================================================
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# Install configuration header files and license file.
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# ===============================================================
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# install sundials_export header file
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install(FILES "${PROJECT_BINARY_DIR}/include/sundials/sundials_export.h"
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DESTINATION "${CMAKE_INSTALL_INCLUDEDIR}/sundials"
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)
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# install configured header file
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install(FILES "${PROJECT_BINARY_DIR}/include/sundials/sundials_config.h"
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DESTINATION "${CMAKE_INSTALL_INCLUDEDIR}/sundials"
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)
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# install shared Fortran 2003 modules
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if(BUILD_FORTRAN_MODULE_INTERFACE)
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# While the .mod files get generated for static and shared
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# libraries, they are identical. So only install one set
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# of the .mod files.
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if(BUILD_STATIC_LIBS)
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install(DIRECTORY ${CMAKE_Fortran_MODULE_DIRECTORY}_STATIC/
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DESTINATION ${Fortran_INSTALL_MODDIR}
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)
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else()
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install(DIRECTORY ${CMAKE_Fortran_MODULE_DIRECTORY}_SHARED/
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DESTINATION ${Fortran_INSTALL_MODDIR}
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)
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endif()
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endif()
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# install license and notice files
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install(FILES "${PROJECT_SOURCE_DIR}/LICENSE"
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DESTINATION "${CMAKE_INSTALL_INCLUDEDIR}/sundials"
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)
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install(FILES "${PROJECT_SOURCE_DIR}/NOTICE"
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DESTINATION "${CMAKE_INSTALL_INCLUDEDIR}/sundials"
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)
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# create package version file
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include(CMakePackageConfigHelpers)
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write_basic_package_version_file(
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SUNDIALSConfigVersion.cmake
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VERSION ${PACKAGE_VERSION}
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COMPATIBILITY SameMajorVersion
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)
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# install targets
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install(
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EXPORT sundials-targets
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FILE SUNDIALSTargets.cmake
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NAMESPACE SUNDIALS::
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DESTINATION "${SUNDIALS_INSTALL_CMAKEDIR}"
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)
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# install SUNDIALSConfig.cmake
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configure_package_config_file(
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"${PROJECT_SOURCE_DIR}/cmake/SUNDIALSConfig.cmake.in"
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"${CMAKE_CURRENT_BINARY_DIR}/SUNDIALSConfig.cmake"
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INSTALL_DESTINATION "${SUNDIALS_INSTALL_CMAKEDIR}"
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)
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install(FILES "${CMAKE_CURRENT_BINARY_DIR}/SUNDIALSConfig.cmake"
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"${CMAKE_CURRENT_BINARY_DIR}/SUNDIALSConfigVersion.cmake"
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DESTINATION "${SUNDIALS_INSTALL_CMAKEDIR}"
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)

‎lib/sundials_6.0.0/CONTRIBUTING.md‎

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# Contributing to SUNDIALS
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At this time, the SUNDIALS team does not have the resources to review and take
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in large additions to the code or significant new features. Contributions
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addressing bug fixes or minor changes are preferred via a pull request to the
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[SUNDIALS GitHub repository](https://github.com/LLNL/sundials).
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All new contributions to SUNDIALS must be made under the BSD 3-clause license.
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See the [LICENSE](./LICENSE) and [NOTICE](./NOTICE) files for details. The
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SUNDIALS team will not accept any file previously released under any other open
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source license. By submitting code, the contributor gives irreversible consent
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to the redistribution and/or modification of the contributed source code.
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Please ensure that any pull request includes user guide additions or changes as
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appropriate, has been tested, and includes a test for any added features.
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Any added files submitted with a pull request must contain a header section at
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the top including the originating author's name and file origin date as well as
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a pointer to the SUNDIALS LICENSE and NOTICE files.
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The act of submitting a pull request (with or without an explicit Signed-off-by
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tag) will be understood as an affirmation of the following [Developer's
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Certificate of Origin (DCO)](http://developercertificate.org/).
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```
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Developer Certificate of Origin
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Version 1.1
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Copyright (C) 2004, 2006 The Linux Foundation and its contributors.
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1 Letterman Drive
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Suite D4700
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San Francisco, CA, 94129
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Everyone is permitted to copy and distribute verbatim copies of this
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license document, but changing it is not allowed.
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Developer's Certificate of Origin 1.1
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By making a contribution to this project, I certify that:
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(a) The contribution was created in whole or in part by me and I
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have the right to submit it under the open source license
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indicated in the file; or
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(b) The contribution is based upon previous work that, to the best
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of my knowledge, is covered under an appropriate open source
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license and I have the right under that license to submit that
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work with modifications, whether created in whole or in part
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by me, under the same open source license (unless I am
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permitted to submit under a different license), as indicated
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in the file; or
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(c) The contribution was provided directly to me by some other
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person who certified (a), (b) or (c) and I have not modified
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it.
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(d) I understand and agree that this project and the contribution
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are public and that a record of the contribution (including all
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personal information I submit with it, including my sign-off) is
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maintained indefinitely and may be redistributed consistent with
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this project or the open source license(s) involved.
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```
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As discussed in the [Docker software project blog](https://blog.docker.com/2014/01/docker-code-contributions-require-developer-certificate-of-origin/)
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this DCO "lets us know that you are entitled to contribute this code to
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[SUNDIALS] and that you are willing to have it used in distributions and
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derivative works."
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"By including the DCO signature, you are stating that one or
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more of the following is true of your contribution:
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1. You created this contribution/change and have the right to submit it
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to SUNDIALS; or
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2. You created this contribution/change based on a previous work with a
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compatible open source license; or
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3. This contribution/change has been provided to you by someone who did
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1 or 2 and you are submitting the contribution unchanged.
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4. You understand this contribution is public and may be redistributed as
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open source software" under the BSD license.
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All commits submitted to the SUNDIALS project need to have the following sign
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off line in the commit message:
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```
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Signed-off-by: Jane Doe <jdoe@address.com>
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```
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Replacing Jane Doe’s details with your name and email address.
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If you've set `user.name` and `user.email` in your Git configuration, you can
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automatically add a sign off line at the end of the commit message by using the
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`-s` option (e.g., `git commit -s`).

‎lib/sundials_6.0.0/INSTALL_GUIDE.pdf‎

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