remove .csv files for .hpp files

Author: SteveBronder

test/unit/math/laplace/aki_ex_test.cpp

@@ -3,9 +3,12 @@
 #include <stan/math/mix.hpp>
 #include <test/unit/math/rev/fun/util.hpp>
 #include <test/unit/math/laplace/laplace_utility.hpp>
-#include <test/unit/math/laplace/roach_data/y.hpp>
+#include <test/unit/math/laplace/roach_data/mu_bad.hpp>
+#include <test/unit/math/laplace/roach_data/sigma_bad.hpp>
+#include <test/unit/math/laplace/roach_data/y_bad.hpp>
+#include <test/unit/math/laplace/roach_data/mu.hpp>
 #include <test/unit/math/laplace/roach_data/sigmaz.hpp>
-#include <test/unit/math/laplace/csv_reader.hpp>
+#include <test/unit/math/laplace/roach_data/y.hpp>
 
 #include <gtest/gtest.h>
 #include <iostream>
@@ -76,21 +79,19 @@ struct cov_fun_functor {
 TEST(WriteArrayBodySimple, ExceededIteration) {
   stan::test::relative_tolerance rel_tol(5e-2);
   const double integrate_1d_reltol = 1e-8;
-  auto mu_samples = stan::math::test::laplace::read_matrix_csv(
-      "./test/unit/math/laplace/roach_data/mu_bad.csv");
-  auto sigmaz_samples = stan::math::test::laplace::read_matrix_csv(
-      "./test/unit/math/laplace/roach_data/sigma_bad.csv");
-  auto y_samples_dbl = stan::math::test::laplace::read_matrix_csv(
-      "./test/unit/math/laplace/roach_data/y_bad.csv");
-  auto y_samples = y_samples_dbl.cast<int>();
-  const int num_samples = mu_samples.cols();
-  const int N = mu_samples.rows();
+  auto&& mu_bad_raw = stan::test::laplace::roach::mu_bad_raw;
+  Eigen::Map<const Eigen::VectorXd> mu_bad(mu_bad_raw.data(), mu_bad_raw.size());
+  auto&& sigma_bad_raw = stan::test::laplace::roach::sigma_bad_raw;
+  Eigen::Map<const Eigen::VectorXd> sigma_bad(sigma_bad_raw.data(), sigma_bad_raw.size());
+  auto&& y_bad_raw = stan::test::laplace::roach::y_bad_raw;
+  Eigen::Map<const Eigen::Matrix<int, -1, 1>> y_bad(y_bad_raw.data(), y_bad_raw.size());
+  const int num_samples = mu_bad.cols();
+  const int N = mu_bad.rows();
   std::ostream* pstream = nullptr;
   for (int i = 1; i <= N; ++i) {
-    auto y = y_samples(i - 1, 0);
-    auto mu = mu_samples(i - 1, 0);
-    auto sigmaz = sigmaz_samples(i - 1, 0);
-
+    auto y = y_bad(i - 1);
+    auto mu = mu_bad(i - 1);
+    auto sigmaz = sigma_bad(i - 1);
     double ll_laplace_val{0};
     try {
       ll_laplace_val = stan::math::laplace_marginal(
@@ -125,10 +126,15 @@ TEST(WriteArrayBodySimple, ExceededIteration) {
 TEST(WriteArrayBodySimple, ExecutesBodyWithHardcodedData) {
   stan::test::relative_tolerance rel_tol(5e-1);
   const double integrate_1d_reltol = 1e-8;
-  auto&& y = stan::math::test::roaches::y;
-  auto&& sigmaz_samples = stan::math::test::roaches::sigmaz;
-  auto mu_samples = stan::math::test::laplace::read_matrix_csv(
-      "./test/unit/math/laplace/roach_data/mu.csv");
+  auto&& y = stan::test::laplace::roach::y;
+  auto&& sigmaz_samples = stan::test::laplace::roach::sigmaz;
+  auto&& mu_raw = stan::test::laplace::roach::mu_raw;
+  std::size_t mu_cols = mu_raw.size() / y.size();
+  Eigen::MatrixXd mu_samples(y.size(), mu_cols);
+  for (std::size_t i = 0; i < y.size(); ++i) {
+    mu_samples.row(i) = Eigen::Map<const Eigen::RowVectorXd>(
+        mu_raw.data() + i * mu_cols, mu_cols);
+  }
   const int num_samples = mu_samples.cols();
   const int N = mu_samples.rows();
   std::ostream* pstream = nullptr;

test/unit/math/laplace/csv_reader.hpp

@@ -1,5 +1,7 @@
 #ifndef STAN_TEST_UNIT_MIX_LAPLACE_MOTORCYCLE_GP_HPP
 #define STAN_TEST_UNIT_MIX_LAPLACE_MOTORCYCLE_GP_HPP
+#include <stan/math/prim/fun/Eigen.hpp>
+#include <vector>
 namespace stan {
 namespace test {
 namespace laplace {

test/unit/math/laplace/motorcycle_gp/x_vec.hpp

@@ -0,0 +1,52 @@
+#pragma once
+#include <vector>
+namespace stan::test::laplace::roach {
+
+static const auto mu_bad_raw = std::vector<double>{
+7.80752,
+7.51451,
+7.5743,
+7.70856,
+7.77522,
+7.72442,
+7.68076,
+7.76911,
+7.99381,
+7.65103,
+7.84669,
+7.5935,
+8.43441,
+8.45228,
+1.5154,
+-0.36275,
+1.88855,
+2.32427,
+0.457985,
+1.72253,
+0.133349,
+2.87951,
+2.72827,
+4.4408,
+-0.51603,
+3.71262,
+2.09379,
+1.89307,
+0.247243,
+-0.822329,
+-0.734069,
+0.671064,
+1.42225,
+3.50831,
+1.28212,
+3.68347,
+1.50733,
+1.5619,
+0.0129277,
+0.0129277,
+1.41688,
+2.6884,
+2.83447,
+5.34951,
+-0.281801};
+}
+

test/unit/math/laplace/roach_data/mu.csv test/unit/math/laplace/roach_data/mu.hpptest/unit/math/laplace/roach_data/mu.csv renamed to test/unit/math/laplace/roach_data/mu.hpp

@@ -0,0 +1,53 @@
+#pragma once
+#include <vector>
+namespace stan::test::laplace::roach {
+
+static const auto sigma_bad_raw = std::vector<double>{
+2.41983,
+2.31403,
+2.34082,
+2.38011,
+2.35559,
+2.30412,
+2.27998,
+2.26287,
+2.31751,
+2.33675,
+2.26045,
+2.33043,
+2.44247,
+2.31163,
+2.12269,
+1.93225,
+2.01201,
+2.05116,
+2.02358,
+2.14954,
+2.04622,
+1.86912,
+1.942,
+2.23927,
+2.03573,
+2.01325,
+1.93353,
+2.18344,
+1.85735,
+1.99109,
+2.10951,
+2.15974,
+1.9316,
+2.05804,
+2.05804,
+2.04376,
+2.04625,
+2.00721,
+1.81805,
+1.81805,
+2.05462,
+2.07048,
+1.94824,
+1.83815,
+2.14474};
+
+}
+

test/unit/math/laplace/roach_data/mu_bad.csv

@@ -1,7 +1,8 @@
 
 #pragma once
 #include <stan/math/prim/fun/Eigen.hpp>
-namespace stan::math::test::roaches {
+namespace stan::test::laplace::roach {
+
 
 static const Eigen::Matrix<double, -1, -1> sigmaz{
     {{2.03651, 1.97969, 2.01858, 2.05345, 2.01933, 1.8819,  1.87645, 2.12067,

test/unit/math/laplace/roach_data/mu_bad.hpp

@@ -1,8 +1,9 @@
 #pragma once
 #include <stan/math/prim/fun/Eigen.hpp>
-namespace stan::math::test::roaches {
+namespace stan::test::laplace::roach {
 
-static std::vector<int> y{
+
+static const std::vector<int> y{
     153, 127, 7,  7,   0,   0,   73,  24,  2,  2,   0,  21,  0,   179, 136, 104,
     2,   5,   1,  203, 32,  1,   135, 59,  29, 120, 44, 1,   2,   193, 13,  37,
     2,   0,   3,  0,   0,   15,  11,  19,  0,  19,  4,  122, 48,  0,   0,   3,