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feat: add incrnanmmeanvar (moving mean/variance with NaN skipping) (fixes #5592) #8502
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9281e0c
feat: add incrnanmmeanvar (moving mean/variance with NaN skipping)
anoofmhd 80cbbdb
chore: update copyright years
stdlib-bot f7c0075
fix: correct import variable name in example and also added trailing …
anoofmhd 4ae8a4b
fix:lint_changed_files / Lint Changed Files (pull_request) and also f…
anoofmhd f39415c
fix: run_affected_examples / Run changed examples (pull_request) and …
anoofmhd 2c7c6d6
Tests updated with more meaningful in terms of actual computation.
anoofmhd 0348aaf
Cleared linting issues
anoofmhd 4fdb603
fixed run_affected_examples / Run changed examples (pull_request) and…
anoofmhd 9bb404d
Fixed : lint_changed_files / Lint Changed Files (pull_request)
anoofmhd 2e32f59
Removed the unwanted related notations in README
anoofmhd a93936b
Removed the unwanted image file
anoofmhd c7a945a
Update lib/node_modules/@stdlib/stats/incr/nanmmeanvar/lib/main.js
anoofmhd afea9ee
Merge branch 'develop' of https://github.com/anoofmhd/stdlib into nan…
anoofmhd 1c50600
Merge branch 'nanmmeanvar' of https://github.com/anoofmhd/stdlib into…
anoofmhd d7777cc
feat: add incremental NaN-aware moving mean and variance module.
anoofmhd 04898b4
docs: add REPL documentation for `nanmmeanvar`
anoofmhd 40821d3
feat: add `incrnanmmeanvar` for incrementally computing moving mean a…
anoofmhd 32b6320
feat: add incremental moving mean and variance accumulator that skips…
anoofmhd f9d80ce
feat: add `incrnanmmeanvar` module for incrementally computing a movi…
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247 changes: 247 additions & 0 deletions
247
lib/node_modules/@stdlib/stats/incr/nanmmeanvar/README.md
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| <!-- | ||
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| @license Apache-2.0 | ||
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| Copyright (c) 2025 The Stdlib Authors. | ||
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| Licensed under the Apache License, Version 2.0 (the "License"); | ||
| you may not use this file except in compliance with the License. | ||
| You may obtain a copy of the License at | ||
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| http://www.apache.org/licenses/LICENSE-2.0 | ||
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| Unless required by applicable law or agreed to in writing, software | ||
| distributed under the License is distributed on an "AS IS" BASIS, | ||
| WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. | ||
| See the License for the specific language governing permissions and | ||
| limitations under the License. | ||
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| --> | ||
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| # incrnanmmeanvar | ||
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| > Compute a moving [arithmetic mean][arithmetic-mean] and [unbiased sample variance][sample-variance] incrementally, **skipping `NaN` values**. | ||
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| <section class="intro"> | ||
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| For a window of size `W`, the [arithmetic mean][arithmetic-mean] is defined as | ||
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| <!-- <equation class="equation" label="eq:arithmetic_mean" align="center" raw="\bar{x} = \frac{1}{W} \sum_{i=0}^{W-1} x_i" alt="Equation for the arithmetic mean."> --> | ||
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| ```math | ||
| \bar{x} = \frac{1}{W} \sum_{i=0}^{W-1} x_i | ||
| ``` | ||
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| <!-- <div class="equation" align="center" data-raw-text="\bar{x} = \frac{1}{W} \sum_{i=0}^{W-1} x_i" data-equation="eq:arithmetic_mean"> | ||
| <img src="https://cdn.jsdelivr.net/gh/stdlib-js/stdlib@c8c3c87eeab590bfdff924ec0fb269fb33a7de2b/lib/node_modules/@stdlib/stats/incr/mmeanvar/docs/img/equation_arithmetic_mean.svg" alt="Equation for the arithmetic mean."> | ||
| <br> | ||
| </div> --> | ||
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| <!-- </equation> --> | ||
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| and the [unbiased sample variance][sample-variance] is defined as | ||
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| <!-- <equation class="equation" label="eq:unbiased_sample_variance" align="center" raw="s^2 = \frac{1}{W-1} \sum_{i=0}^{W-1} ( x_i - \bar{x} )^2" alt="Equation for the unbiased sample variance."> --> | ||
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| ```math | ||
| s^2 = \frac{1}{W-1} \sum_{i=0}^{W-1} ( x_i - \bar{x} )^2 | ||
| ``` | ||
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| <!-- <div class="equation" align="center" data-raw-text="s^2 = \frac{1}{W-1} \sum_{i=0}^{W-1} ( x_i - \bar{x} )^2" data-equation="eq:unbiased_sample_variance"> | ||
| <img src="https://cdn.jsdelivr.net/gh/stdlib-js/stdlib@563a8587d936008c82db675be84f8ce1474fee27/lib/node_modules/@stdlib/stats/incr/mmeanvar/docs/img/equation_unbiased_sample_variance.svg" alt="Equation for the unbiased sample variance."> | ||
| <br> | ||
| </div> --> | ||
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| <!-- </equation> --> | ||
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| </section> | ||
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| <!-- /.intro --> | ||
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| <section class="usage"> | ||
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| ## Usage | ||
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| ```javascript | ||
| var incrnanmmeanvar = require( '@stdlib/stats/incr/nanmmeanvar' ); | ||
| ``` | ||
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| #### incrnanmmeanvar( \[out,] window ) | ||
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| Returns an accumulator `function` which incrementally computes a moving [arithmetic mean][arithmetic-mean] and [unbiased sample variance][sample-variance] **while skipping `NaN` values**. The `window` parameter defines the maximum number of most recent **non-NaN** values used to compute the moving statistics. | ||
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| ```javascript | ||
| var accumulator = incrnanmmeanvar( 3 ); | ||
| ``` | ||
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| By default, the returned accumulator `function` returns the accumulated values as a two-element `array`. To avoid unnecessary memory allocation, the function supports providing an output (destination) object. Unlike `incrmmeanvar`, this accumulator ignores (skips) any `NaN` values and does not allow them to propagate into the moving mean and variance. | ||
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| ```javascript | ||
| var Float64Array = require( '@stdlib/array/float64' ); | ||
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| var accumulator = incrnanmmeanvar( new Float64Array( 2 ), 3 ); | ||
| ``` | ||
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| #### accumulator( \[x] ) | ||
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| If provided an input value `x`, the accumulator function updates and returns the current moving arithmetic mean and unbiased sample variance. If `x` is `NaN`, the value is ignored (i.e., it does not affect the window). If not provided an input value `x`, the accumulator function returns the current accumulated values without updating. | ||
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| ```javascript | ||
| var incrnanmmeanvar = require( '@stdlib/stats/incr/nanmmeanvar' ); | ||
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| var accumulator = incrnanmmeanvar( 3 ); | ||
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| var out = accumulator(); | ||
| // returns null | ||
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| // Fill the window (no NaNs yet)... | ||
| out = accumulator( 2.0 ); // [2.0] | ||
| // returns [ 2.0, 0.0 ] | ||
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| out = accumulator( NaN ); // NaN is ignored [2.0] | ||
| // returns [ 2.0, 0.0 ] | ||
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| out = accumulator( 1.0 ); // [2.0, 1.0] | ||
| // returns [ 1.5, 0.5 ] | ||
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| out = accumulator( 3.0 ); // [2.0, 1.0, 3.0] | ||
| // returns [ 2.0, 1.0 ] | ||
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| // Window begins sliding... | ||
| out = accumulator( -7.0 ); // [1.0, 3.0, -7.0] | ||
| // returns [ -1.0, 28.0 ] | ||
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| out = accumulator( NaN ); // NaN ignored [1.0, 3.0, -7.0] | ||
| // returns [ -1.0, 28.0 ] | ||
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| out = accumulator( -5.0 ); // [3.0, -7.0, -5.0] | ||
| // returns [ -3.0, 28.0 ] | ||
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| out = accumulator(); | ||
| // returns [ -3.0, 28.0 ] | ||
| ``` | ||
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| </section> | ||
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| <!-- /.usage --> | ||
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| <section class="notes"> | ||
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| ## Notes | ||
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| - Input values are **not** type checked. If provided `NaN`, the value is ignored and does not affect the moving window or the accumulated statistics. If non-numeric inputs are possible, you are advised to type check and handle them **before** passing values to the accumulator function. | ||
| - As `W` valid (non-`NaN`) values are needed to fill the window buffer, the first `W-1` returned values are calculated from smaller sample sizes. Until the window has received `W` valid values, each returned value is calculated from all valid inputs seen so far. | ||
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| </section> | ||
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| <!-- /.notes --> | ||
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| <section class="examples"> | ||
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| ## Examples | ||
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| <!-- eslint no-undef: "error" --> | ||
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| ```javascript | ||
| var randu = require( '@stdlib/random/base/randu' ); | ||
| var Float64Array = require( '@stdlib/array/float64' ); | ||
| var ArrayBuffer = require( '@stdlib/array/buffer' ); | ||
| var incrnanmmeanvar = require( '@stdlib/stats/incr/nanmmeanvar' ); | ||
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| var offset; | ||
| var acc; | ||
| var buf; | ||
| var out; | ||
| var mv; | ||
| var N; | ||
| var v; | ||
| var i; | ||
| var j; | ||
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| // Define the number of accumulators: | ||
| N = 5; | ||
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| // Create an array buffer for storing accumulator output: | ||
| buf = new ArrayBuffer( N*2*8 ); | ||
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| // Initialize accumulators: | ||
| acc = []; | ||
| for ( i = 0; i < N; i++ ) { | ||
| // Compute the byte offset for the ith accumulator: | ||
| offset = i * 2 * 8; | ||
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| // Create a typed array view over the correct section of the buffer: | ||
| out = new Float64Array( buf, offset, 2 ); | ||
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| // Create a moving mean/variance accumulator with window W = 5: | ||
| acc.push( incrnanmmeanvar( out, 5 ) ); | ||
| } | ||
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| // Simulate streaming data updates: | ||
| for ( i = 0; i < 100; i++ ) { | ||
| for ( j = 0; j < N; j++ ) { | ||
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| // Generate random values, but occasionally insert NaN. | ||
| // Any NaNs are ignored by the accumulator. | ||
| v = ( randu() > 0.1 ) ? randu() * 100 : NaN; | ||
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| // Update accumulator j: | ||
| acc[ j ]( v ); | ||
| } | ||
| } | ||
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| // Display final moving means and variances: | ||
| console.log( 'Mean\tVariance' ); | ||
| for ( i = 0; i < N; i++ ) { | ||
| mv = acc[ i ](); // Get the current result | ||
| console.log( mv[ 0 ].toFixed( 3 ) + '\t' + mv[ 1 ].toFixed( 3 ) ); | ||
| } | ||
| ``` | ||
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| </section> | ||
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| <!-- /.examples --> | ||
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| <!-- Section for related `stdlib` packages. Do not manually edit this section, as it is automatically populated. --> | ||
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| <section class="related"> | ||
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| * * * | ||
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| ## See Also | ||
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| - <span class="package-name">[`@stdlib/stats/incr/mmeanvar`][@stdlib/stats/incr/mmeanvar]</span><span class="delimiter">: </span><span class="description">compute a moving arithmetic mean and unbiased sample variance incrementally (**propagates NaN values**).</span> | ||
| - <span class="package-name">[`@stdlib/stats/incr/meanvar`][@stdlib/stats/incr/meanvar]</span><span class="delimiter">: </span><span class="description">compute an arithmetic mean and unbiased sample variance incrementally.</span> | ||
| - <span class="package-name">[`@stdlib/stats/incr/mmean`][@stdlib/stats/incr/mmean]</span><span class="delimiter">: </span><span class="description">compute a moving arithmetic mean incrementally.</span> | ||
| - <span class="package-name">[`@stdlib/stats/incr/mmeanstdev`][@stdlib/stats/incr/mmeanstdev]</span><span class="delimiter">: </span><span class="description">compute a moving arithmetic mean and corrected sample standard deviation incrementally.</span> | ||
| - <span class="package-name">[`@stdlib/stats/incr/mvariance`][@stdlib/stats/incr/mvariance]</span><span class="delimiter">: </span><span class="description">compute a moving unbiased sample variance incrementally.</span> | ||
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| </section> | ||
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| <!-- /.related --> | ||
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| <!-- Section for all links. Make sure to keep an empty line after the `section` element and another before the `/section` close. --> | ||
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| <section class="links"> | ||
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| [arithmetic-mean]: https://en.wikipedia.org/wiki/Arithmetic_mean | ||
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| [sample-variance]: https://en.wikipedia.org/wiki/Variance | ||
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| <!-- <related-links> --> | ||
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| [@stdlib/stats/incr/mmeanvar]: https://github.com/stdlib-js/stdlib/tree/develop/lib/node_modules/%40stdlib/stats/incr/mmeanvar | ||
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| [@stdlib/stats/incr/meanvar]: https://github.com/stdlib-js/stdlib/tree/develop/lib/node_modules/%40stdlib/stats/incr/meanvar | ||
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| [@stdlib/stats/incr/mmean]: https://github.com/stdlib-js/stdlib/tree/develop/lib/node_modules/%40stdlib/stats/incr/mmean | ||
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| [@stdlib/stats/incr/mmeanstdev]: https://github.com/stdlib-js/stdlib/tree/develop/lib/node_modules/%40stdlib/stats/incr/mmeanstdev | ||
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| [@stdlib/stats/incr/mvariance]: https://github.com/stdlib-js/stdlib/tree/develop/lib/node_modules/%40stdlib/stats/incr/mvariance | ||
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| <!-- </related-links> --> | ||
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| </section> | ||
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| <!-- /.links --> | ||
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69
lib/node_modules/@stdlib/stats/incr/nanmmeanvar/benchmark/benchmark.js
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| /** | ||
| * @license Apache-2.0 | ||
| * | ||
| * Copyright (c) 2025 The Stdlib Authors. | ||
| * | ||
| * Licensed under the Apache License, Version 2.0 (the "License"); | ||
| * you may not use this file except in compliance with the License. | ||
| * You may obtain a copy of the License at | ||
| * | ||
| * http://www.apache.org/licenses/LICENSE-2.0 | ||
| * | ||
| * Unless required by applicable law or agreed to in writing, software | ||
| * distributed under the License is distributed on an "AS IS" BASIS, | ||
| * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. | ||
| * See the License for the specific language governing permissions and | ||
| * limitations under the License. | ||
| */ | ||
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| 'use strict'; | ||
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| // MODULES // | ||
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| var bench = require( '@stdlib/bench' ); | ||
| var randu = require( '@stdlib/random/base/randu' ); | ||
| var pkg = require( './../package.json' ).name; | ||
| var incrnanmmeanvar = require( './../lib' ); | ||
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| // MAIN // | ||
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| bench( pkg, function benchmark( b ) { | ||
| var f; | ||
| var i; | ||
| b.tic(); | ||
| for ( i = 0; i < b.iterations; i++ ) { | ||
| f = incrnanmmeanvar( (i%5)+1 ); | ||
| if ( typeof f !== 'function' ) { | ||
| b.fail( 'should return a function' ); | ||
| } | ||
| } | ||
| b.toc(); | ||
| if ( typeof f !== 'function' ) { | ||
| b.fail( 'should return a function' ); | ||
| } | ||
| b.pass( 'benchmark finished' ); | ||
| b.end(); | ||
| }); | ||
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| bench( pkg+'::accumulator', function benchmark( b ) { | ||
| var acc; | ||
| var v; | ||
| var i; | ||
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| acc = incrnanmmeanvar( 5 ); | ||
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| b.tic(); | ||
| for ( i = 0; i < b.iterations; i++ ) { | ||
| v = acc( randu() ); | ||
| if ( v.length !== 2 ) { | ||
| b.fail( 'should contain two elements' ); | ||
| } | ||
| } | ||
| b.toc(); | ||
| if ( v[ 0 ] !== v[ 0 ] || v[ 1 ] !== v[ 1 ] ) { | ||
| b.fail( 'should not return NaN' ); | ||
| } | ||
| b.pass( 'benchmark finished' ); | ||
| b.end(); | ||
| }); |
43 changes: 43 additions & 0 deletions
43
...de_modules/@stdlib/stats/incr/nanmmeanvar/docs/img/equation_arithmetic_mean.svg
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