Merge branch 'master' into 3471_get_option_fix

Author: sergisiso

.github/workflows/lfric_test.yml

@@ -149,8 +149,13 @@ jobs:
         rm -rf working-gh-ompoffload
         export BUILD_START="${SECONDS}"
         LFRIC_OFFLOAD_DIRECTIVES=omp ./build/local_build.py -v -j ${NUM_PARALLEL} -p psyclone-test \
-          -w working-gh-ompoffload gungho_model
+          -w working-gh-ompoffload gungho_model |& tee output.txt
+        # Piping to tee ignores the errcode of the first command, make sure we account for it
+        if [[ ${PIPESTATUS[0]} -ne 0 ]]; then
+            exit ${PIPESTATUS[0]}
+        fi
         export BUILD_ELAPSED=$((${SECONDS}-${BUILD_START}))
+        ${PSYCLONE_LFRIC_DIR}/aggregate_gpu_stats.sh output.txt
         cd applications/gungho_model/example
         rm -f timer.txt gungho_model-checksums.txt  # In case there were from a previous run
         export OMP_NUM_THREADS=12

.github/workflows/python-package.yml

@@ -83,12 +83,11 @@ jobs:
           # Uncomment the below to use the submodule version of fparser rather
           # than the latest release from pypi.
           # pip install external/fparser
-          pip install .[doc]
+          pip install -e .[test,doc]
       # Now we can check for warnings and broken links
+      - run: cd doc; make doctest
       - run: cd doc; make html SPHINXOPTS="-W --keep-going"
       - run: cd doc; make linkcheck
-      # TODO #2936: There are many doctest issues, so commenting out for now
-      # - run: cd doc; make doctest
   build:
     if: ${{ github.repository != 'stfc/PSyclone-mirror' }}
     runs-on: ubuntu-latest
@@ -142,12 +141,12 @@ jobs:
         if: ${{ !(matrix.python-version == '3.9') }}
         run: |
           locale
-          pytest -n auto --cov=psyclone --cov-report=xml src/psyclone/tests
+          pytest -n auto --doctest-modules --cov=psyclone --cov-report=xml src/psyclone
       - name: Test with pytest and C Locale
         if: ${{ matrix.python-version == '3.9' }}
         run: |
           locale
-          pytest -n auto --cov=psyclone --cov-report=xml src/psyclone/tests
+          pytest -n auto --doctest-modules --cov=psyclone --cov-report=xml src/psyclone
         env:
           LC_ALL: C
           LANG: C

changelog

@@ -1,12 +1,31 @@
-   34) PR #3440. Update to use release 0.2.4 of fparser.
+   5) PR #3431. Adds the force_private option to the OMPParallelTrans.
+
+   4) PR #3441 for #2936, #1220 and #2088. Fixes the doctests and adds
+   them to the GHA CI.
 
+   3) PR #3456 for #3446. Fix issues with CodeBlocks and routine names
+   in the presence of comments.
+
+   2) PR #3450 for #3262. Updates the LFRic GPU scripts and aggregates
+   the transformation statistics.
+
+   1) PR #3469. Extends the Module manager to have an extensible list
+   of file extensions and includes x95 and x03 suffixes by default.
+
+Release 3.3.0 29th June 2026
+
+   35) PR #3476 for #3475. Fixes OMPParallelLoopTrans to support the
+   force_private keyword argument.
+
+   34) PR #3440. Update to use release 0.2.4 of fparser.
+
    33) PR #3467. Update CI compilers.
 
    32) PR #3458 for #2721. Adds ArrayConstructor support into the PSyIR.
 
    31) PR #3442. Extends Call.get_callee() to permit implicit reshaping
    of arguments.
- 
+
    30) PR #3451	towards #3449. Adds support for keeping 'ACC routine' and
    'OMP declare target' directives in existing code.
 
@@ -48,9 +67,9 @@
 
    16) PR #3422 for #440. Updates tests to use the Fortran backend to generate
    GOLoops in test suite.
-   
+
    15) PR #3066 towards #2971. Moves ACCLoopTrans and OMPParallelLoopTrans
-   into psyir.transformations. 
+   into psyir.transformations.
 
    14) PR #3419 for #3418. Adds elseif output to the Fortran backend.
 

doc/developer_guide/dependency.rst

@@ -461,7 +461,7 @@ thread-private. Note that this code does not handle the usage of
       # the access information as well as from the symbol table
       # into account.
       access_sequence = var_accesses[signature]
-      if symbol.is_array_access(access_info=access_info):
+      if symbol.is_array_access(access_info=access_sequence):
           # It's not a scalar variable, so it will not be private
           continue
 
@@ -504,7 +504,7 @@ until we find accesses that would prevent parallelisation:
    for next_statement in statements:
        # Add the variable accesses of the next statement to
        # the existing accesses:
-       next_statement.reference_accesses(accesses)
+       accesses = next_statement.reference_accesses()
        # Stop when the next statement can not be parallelised
        # together with the previous accesses:
        if not can_be_parallelised(accesses):
@@ -581,7 +581,7 @@ can be parallelised:
 .. testoutput::
     :hide:
 
-    Error: The write access to 'a(i,i)' and the read access to 'a(i + 1,i + 1)' are dependent and cannot be parallelised. Variable: 'a'.
+    Error: The write access to 'a(i,i)' in 'a(i,i) = j + k' and the read access to 'a(i + 1,i + 1)' in 'a(i,i) = a(i + 1,i + 1)' are dependent and cannot be parallelised. Variable: 'a'.
 
 .. _defusechain:
 

doc/developer_guide/interface_example.py

@@ -35,11 +35,4 @@ def some_function(filename, kernel_path, node=None):
                              it can be raised by different errors.
     :raises GenerationError: same exception, raised by a different error.
 
-    For example:
-
-    >>> from psyclone.generator import generate
-    >>> API="gocean"
-    >>> alg, psy = generate(SOURCE_FILE, api=API)
-    >>> alg, psy = generate(SOURCE_FILE, api=API, kernel_paths=[KERNEL_PATH])
-
     '''

doc/developer_guide/module_manager.rst

@@ -121,7 +121,8 @@ which prints the filenames of all modules used in ``tl_testkern_mod``:
 .. testcode ::
 
     mod_manager = ModuleManager.get()
-    # Add the path to the PSyclone LFRic example codes:
+    # Add the path to the LFRic module directories:
+    mod_manager.add_search_path("../external/lfric_infrastructure/")
     mod_manager.add_search_path("../src/psyclone/tests/test_files/"
                                 "lfric")
 
@@ -134,15 +135,14 @@ which prints the filenames of all modules used in ``tl_testkern_mod``:
         mod_info = mod_manager.get_module_info(module_name)
         print("Module:", module_name, os.path.basename(mod_info.filename))
 
+
 .. testoutput::
 
     Module: argument_mod argument_mod.f90
     Module: constants_mod constants_mod.f90
     Module: fs_continuity_mod fs_continuity_mod.f90
     Module: kernel_mod kernel_mod.f90
 
-
-
 FileInfo
 ========
 

doc/developer_guide/psyir_symbols.rst

@@ -337,7 +337,7 @@ specialisations are possible:
     >>> # The following statement would fail because the initial_value doesn't
     >>> # match the datatype of the symbol:
     >>> # sym2.specialise(DataSymbol, datatype=ScalarType.integer_type(),
-    ...                   initial_value=3.14)
+    >>> #                 initial_value=3.14)
     >>> # The following statement is valid and initial_value is set to 3
     >>> # (and is_constant will default to False):
     >>> sym2.specialise(DataSymbol, datatype=ScalarType.integer_type(), initial_value=3)

doc/developer_guide/transformations.rst

@@ -33,14 +33,6 @@
 .. -----------------------------------------------------------------------------
 .. Written by R. W. Ford, A. R. Porter, S. Siso and N. Nobre, STFC Daresbury Lab
 
-.. testsetup::
-
-    # Define GOCEAN_SOURCE_FILE to point to an existing gocean 1.0 file.
-    GOCEAN_SOURCE_FILE = ("../src/psyclone/tests/test_files/"
-        "gocean1p0/test11_different_iterates_over_one_invoke.f90")
-    # Define NEMO_SOURCE_FILE to point to an existing nemo file.
-    NEMO_SOURCE_FILE = ("../examples/nemo/code/tra_adv.F90")
-
 
 Transformations
 ###############

doc/reference_guide/doxygen.config

@@ -48,7 +48,7 @@ PROJECT_NAME           = "Reference Guide"
 # could be handy for archiving the generated documentation or if some version
 # control system is used.
 
-PROJECT_NUMBER         = 3.3.1-dev
+PROJECT_NUMBER         = 3.3.0
 
 # Using the PROJECT_BRIEF tag one can provide an optional one line description
 # for a project that appears at the top of each page and should give viewers a

doc/user_guide/gocean1p0.rst

@@ -196,8 +196,8 @@ Example
 +++++++
 
 PSyclone is distributed with a full example of the use of the
-GOcean Library. See ``<PSYCLONEHOME>/examples/gocean/shallow_alg.f90``.  In what
-follows we will walk through a slightly cut-down example for a
+GOcean Library. See ``<PSYCLONEHOME>/examples/gocean/eg1/shallow_alg.f90``.
+In what follows we will walk through a slightly cut-down example for a
 different program.
 
 The following code illustrates the use of dl_esm_inf for constructing an