Workflow file for this run
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| name: Publish DNAnexus Expression Classification App | |
| on: | |
| release: | |
| types: [released, edited] | |
| jobs: | |
| push_to_DNAnexus: | |
| name: Push app to DNAnexus | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Check out the repo | |
| uses: actions/checkout@v5 | |
| - name: Sanitize Version for Tagging | |
| run: echo ${{ github.event.release.tag_name }} | sed 's/^v//' | (read; echo SHORT_VERSION=$REPLY) >> $GITHUB_ENV | |
| - name: Update DX version | |
| run: sed -i.bak "s/EXPRESSION_SHORT_VERSION/${{ env.SHORT_VERSION }}/" dx_app/dxapp.json && sed -i.bak "s/EXPRESSION_VERSION/${{ github.event.release.tag_name }}/" dx_app/src/t-SNE.sh | |
| - name: Install DX toolkit | |
| run: pip3 install dxpy | |
| - name: Login to DNAnexus | |
| run: dx login --noprojects --token ${{ secrets.DX_TOKEN }} | |
| - name: Build and push | |
| id: dx_build | |
| run: dx build --app --publish dx_app |