diff --git a/poetry.lock b/poetry.lock index b482a3f..1146dd2 100644 --- a/poetry.lock +++ b/poetry.lock @@ -1,4 +1,4 @@ -# This file is automatically @generated by Poetry 1.6.1 and should not be changed by hand. +# This file is automatically @generated by Poetry 2.2.1 and should not be changed by hand. [[package]] name = "atomicwrites" @@ -6,6 +6,8 @@ version = "1.4.1" description = "Atomic file writes." optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" +groups = ["dev"] +markers = "sys_platform == \"win32\"" files = [ {file = "atomicwrites-1.4.1.tar.gz", hash = "sha256:81b2c9071a49367a7f770170e5eec8cb66567cfbbc8c73d20ce5ca4a8d71cf11"}, ] @@ -16,6 +18,7 @@ version = "23.1.0" description = "Classes Without Boilerplate" optional = false python-versions = ">=3.7" +groups = ["dev"] files = [ {file = "attrs-23.1.0-py3-none-any.whl", hash = "sha256:1f28b4522cdc2fb4256ac1a020c78acf9cba2c6b461ccd2c126f3aa8e8335d04"}, {file = "attrs-23.1.0.tar.gz", hash = "sha256:6279836d581513a26f1bf235f9acd333bc9115683f14f7e8fae46c98fc50e015"}, @@ -26,7 +29,7 @@ cov = ["attrs[tests]", "coverage[toml] (>=5.3)"] dev = ["attrs[docs,tests]", "pre-commit"] docs = ["furo", "myst-parser", "sphinx", "sphinx-notfound-page", "sphinxcontrib-towncrier", "towncrier", "zope-interface"] tests = ["attrs[tests-no-zope]", "zope-interface"] -tests-no-zope = ["cloudpickle", "hypothesis", "mypy (>=1.1.1)", "pympler", "pytest (>=4.3.0)", "pytest-mypy-plugins", "pytest-xdist[psutil]"] +tests-no-zope = ["cloudpickle ; platform_python_implementation == \"CPython\"", "hypothesis", "mypy (>=1.1.1) ; platform_python_implementation == \"CPython\"", "pympler", "pytest (>=4.3.0)", "pytest-mypy-plugins ; platform_python_implementation == \"CPython\" and python_version < \"3.11\"", "pytest-xdist[psutil]"] [[package]] name = "black" @@ -34,6 +37,7 @@ version = "21.12b0" description = "The uncompromising code formatter." optional = false python-versions = ">=3.6.2" +groups = ["dev"] files = [ {file = "black-21.12b0-py3-none-any.whl", hash = "sha256:a615e69ae185e08fdd73e4715e260e2479c861b5740057fde6e8b4e3b7dd589f"}, {file = "black-21.12b0.tar.gz", hash = "sha256:77b80f693a569e2e527958459634f18df9b0ba2625ba4e0c2d5da5be42e6f2b3"}, @@ -63,6 +67,7 @@ version = "6.0.0" description = "An easy safelist-based HTML-sanitizing tool." optional = false python-versions = ">=3.7" +groups = ["dev"] files = [ {file = "bleach-6.0.0-py3-none-any.whl", hash = "sha256:33c16e3353dbd13028ab4799a0f89a83f113405c766e9c122df8a06f5b85b3f4"}, {file = "bleach-6.0.0.tar.gz", hash = "sha256:1a1a85c1595e07d8db14c5f09f09e6433502c51c595970edc090551f0db99414"}, @@ -81,6 +86,7 @@ version = "2023.7.22" description = "Python package for providing Mozilla's CA Bundle." optional = false python-versions = ">=3.6" +groups = ["dev"] files = [ {file = "certifi-2023.7.22-py3-none-any.whl", hash = "sha256:92d6037539857d8206b8f6ae472e8b77db8058fec5937a1ef3f54304089edbb9"}, {file = "certifi-2023.7.22.tar.gz", hash = "sha256:539cc1d13202e33ca466e88b2807e29f4c13049d6d87031a3c110744495cb082"}, @@ -92,6 +98,8 @@ version = "1.15.1" description = "Foreign Function Interface for Python calling C code." optional = false python-versions = "*" +groups = ["dev"] +markers = "sys_platform == \"linux\"" files = [ {file = "cffi-1.15.1-cp27-cp27m-macosx_10_9_x86_64.whl", hash = "sha256:a66d3508133af6e8548451b25058d5812812ec3798c886bf38ed24a98216fab2"}, {file = "cffi-1.15.1-cp27-cp27m-manylinux1_i686.whl", hash = "sha256:470c103ae716238bbe698d67ad020e1db9d9dba34fa5a899b5e21577e6d52ed2"}, @@ -168,6 +176,7 @@ version = "3.2.0" description = "The Real First Universal Charset Detector. Open, modern and actively maintained alternative to Chardet." optional = false python-versions = ">=3.7.0" +groups = ["dev"] files = [ {file = "charset-normalizer-3.2.0.tar.gz", hash = "sha256:3bb3d25a8e6c0aedd251753a79ae98a093c7e7b471faa3aa9a93a81431987ace"}, {file = "charset_normalizer-3.2.0-cp310-cp310-macosx_10_9_universal2.whl", hash = "sha256:0b87549028f680ca955556e3bd57013ab47474c3124dc069faa0b6545b6c9710"}, @@ -252,6 +261,7 @@ version = "8.1.6" description = "Composable command line interface toolkit" optional = false python-versions = ">=3.7" +groups = ["dev"] files = [ {file = "click-8.1.6-py3-none-any.whl", hash = "sha256:fa244bb30b3b5ee2cae3da8f55c9e5e0c0e86093306301fb418eb9dc40fbded5"}, {file = "click-8.1.6.tar.gz", hash = "sha256:48ee849951919527a045bfe3bf7baa8a959c423134e1a5b98c05c20ba75a1cbd"}, @@ -266,6 +276,7 @@ version = "0.4.0" description = "Logging integration for Click" optional = false python-versions = "*" +groups = ["dev"] files = [ {file = "click-log-0.4.0.tar.gz", hash = "sha256:3970f8570ac54491237bcdb3d8ab5e3eef6c057df29f8c3d1151a51a9c23b975"}, {file = "click_log-0.4.0-py2.py3-none-any.whl", hash = "sha256:a43e394b528d52112af599f2fc9e4b7cf3c15f94e53581f74fa6867e68c91756"}, @@ -280,10 +291,12 @@ version = "0.4.6" description = "Cross-platform colored terminal text." optional = false python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,!=3.5.*,!=3.6.*,>=2.7" +groups = ["main", "dev"] files = [ {file = "colorama-0.4.6-py2.py3-none-any.whl", hash = "sha256:4f1d9991f5acc0ca119f9d443620b77f9d6b33703e51011c16baf57afb285fc6"}, {file = "colorama-0.4.6.tar.gz", hash = "sha256:08695f5cb7ed6e0531a20572697297273c47b8cae5a63ffc6d6ed5c201be6e44"}, ] +markers = {main = "sys_platform == \"win32\""} [[package]] name = "colorlog" @@ -291,6 +304,7 @@ version = "6.7.0" description = "Add colours to the output of Python's logging module." optional = false python-versions = ">=3.6" +groups = ["main"] files = [ {file = "colorlog-6.7.0-py2.py3-none-any.whl", hash = "sha256:0d33ca236784a1ba3ff9c532d4964126d8a2c44f1f0cb1d2b0728196f512f662"}, {file = "colorlog-6.7.0.tar.gz", hash = "sha256:bd94bd21c1e13fac7bd3153f4bc3a7dc0eb0974b8bc2fdf1a989e474f6e582e5"}, @@ -308,6 +322,8 @@ version = "41.0.3" description = "cryptography is a package which provides cryptographic recipes and primitives to Python developers." optional = false python-versions = ">=3.7" +groups = ["dev"] +markers = "sys_platform == \"linux\"" files = [ {file = "cryptography-41.0.3-cp37-abi3-macosx_10_12_universal2.whl", hash = "sha256:652627a055cb52a84f8c448185922241dd5217443ca194d5739b44612c5e6507"}, {file = "cryptography-41.0.3-cp37-abi3-macosx_10_12_x86_64.whl", hash = "sha256:8f09daa483aedea50d249ef98ed500569841d6498aa9c9f4b0531b9964658922"}, @@ -353,6 +369,7 @@ version = "3.0.0" description = "The Cython compiler for writing C extensions in the Python language." optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" +groups = ["main"] files = [ {file = "Cython-3.0.0-cp310-cp310-macosx_10_9_x86_64.whl", hash = "sha256:7c7d728e1a49ad01d41181e3a9ea80b8d14e825f4679e4dd837cbf7bca7998a5"}, {file = "Cython-3.0.0-cp310-cp310-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:626a4a6ef4b7ced87c348ea805488e4bd39dad9d0b39659aa9e1040b62bbfedf"}, @@ -420,6 +437,7 @@ version = "0.20.1" description = "Docutils -- Python Documentation Utilities" optional = false python-versions = ">=3.7" +groups = ["dev"] files = [ {file = "docutils-0.20.1-py3-none-any.whl", hash = "sha256:96f387a2c5562db4476f09f13bbab2192e764cac08ebbf3a34a95d9b1e4a59d6"}, {file = "docutils-0.20.1.tar.gz", hash = "sha256:f08a4e276c3a1583a86dce3e34aba3fe04d02bba2dd51ed16106244e8a923e3b"}, @@ -431,6 +449,7 @@ version = "1.3.1" description = "Dictionary wrapper for quick access to deeply nested keys." optional = false python-versions = ">=3.5,<4.0" +groups = ["dev"] files = [ {file = "dotty_dict-1.3.1-py3-none-any.whl", hash = "sha256:5022d234d9922f13aa711b4950372a06a6d64cb6d6db9ba43d0ba133ebfce31f"}, {file = "dotty_dict-1.3.1.tar.gz", hash = "sha256:4b016e03b8ae265539757a53eba24b9bfda506fb94fbce0bee843c6f05541a15"}, @@ -442,6 +461,7 @@ version = "2.1.0" description = "Copy your docs directly to the gh-pages branch." optional = false python-versions = "*" +groups = ["dev"] files = [ {file = "ghp-import-2.1.0.tar.gz", hash = "sha256:9c535c4c61193c2df8871222567d7fd7e5014d835f97dc7b7439069e2413d343"}, {file = "ghp_import-2.1.0-py3-none-any.whl", hash = "sha256:8337dd7b50877f163d4c0289bc1f1c7f127550241988d568c1db512c4324a619"}, @@ -459,6 +479,7 @@ version = "4.0.10" description = "Git Object Database" optional = false python-versions = ">=3.7" +groups = ["dev"] files = [ {file = "gitdb-4.0.10-py3-none-any.whl", hash = "sha256:c286cf298426064079ed96a9e4a9d39e7f3e9bf15ba60701e95f5492f28415c7"}, {file = "gitdb-4.0.10.tar.gz", hash = "sha256:6eb990b69df4e15bad899ea868dc46572c3f75339735663b81de79b06f17eb9a"}, @@ -473,6 +494,7 @@ version = "3.1.32" description = "GitPython is a Python library used to interact with Git repositories" optional = false python-versions = ">=3.7" +groups = ["dev"] files = [ {file = "GitPython-3.1.32-py3-none-any.whl", hash = "sha256:e3d59b1c2c6ebb9dfa7a184daf3b6dd4914237e7488a1730a6d8f6f5d0b4187f"}, {file = "GitPython-3.1.32.tar.gz", hash = "sha256:8d9b8cb1e80b9735e8717c9362079d3ce4c6e5ddeebedd0361b228c3a67a62f6"}, @@ -483,17 +505,19 @@ gitdb = ">=4.0.1,<5" [[package]] name = "gtfparse" -version = "1.3.0" -description = "GTF Parsing" +version = "2.5.0" +description = "Parsing library for extracting data frames of genomic features from GTF files" optional = false -python-versions = "*" +python-versions = ">=3.7" +groups = ["main"] files = [ - {file = "gtfparse-1.3.0.tar.gz", hash = "sha256:d957f18e5f70413f89a28ef83068c461b6407eb38fd30e99b8da3d69143527b1"}, + {file = "gtfparse-2.5.0-py3-none-any.whl", hash = "sha256:ccc9e9e77b7bdd90dda0e41da864714cb40b6b0c64ecc1d8a131e11497357140"}, + {file = "gtfparse-2.5.0.tar.gz", hash = "sha256:9fea54811cd87f597a110a49dc1b1b6a3325ffb7d1f36ecc62c32d14d3eb9493"}, ] [package.dependencies] -numpy = ">=1.7" -pandas = ">=0.15" +polars = ">=0.20.2,<0.21.0" +pyarrow = ">=14.0.2,<14.1.0" [[package]] name = "idna" @@ -501,6 +525,7 @@ version = "3.4" description = "Internationalized Domain Names in Applications (IDNA)" optional = false python-versions = ">=3.5" +groups = ["dev"] files = [ {file = "idna-3.4-py3-none-any.whl", hash = "sha256:90b77e79eaa3eba6de819a0c442c0b4ceefc341a7a2ab77d7562bf49f425c5c2"}, {file = "idna-3.4.tar.gz", hash = "sha256:814f528e8dead7d329833b91c5faa87d60bf71824cd12a7530b5526063d02cb4"}, @@ -512,6 +537,7 @@ version = "6.8.0" description = "Read metadata from Python packages" optional = false python-versions = ">=3.8" +groups = ["dev"] files = [ {file = "importlib_metadata-6.8.0-py3-none-any.whl", hash = "sha256:3ebb78df84a805d7698245025b975d9d67053cd94c79245ba4b3eb694abe68bb"}, {file = "importlib_metadata-6.8.0.tar.gz", hash = "sha256:dbace7892d8c0c4ac1ad096662232f831d4e64f4c4545bd53016a3e9d4654743"}, @@ -523,7 +549,7 @@ zipp = ">=0.5" [package.extras] docs = ["furo", "jaraco.packaging (>=9)", "jaraco.tidelift (>=1.4)", "rst.linker (>=1.9)", "sphinx (>=3.5)", "sphinx-lint"] perf = ["ipython"] -testing = ["flufl.flake8", "importlib-resources (>=1.3)", "packaging", "pyfakefs", "pytest (>=6)", "pytest-black (>=0.3.7)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=2.2)", "pytest-mypy (>=0.9.1)", "pytest-perf (>=0.9.2)", "pytest-ruff"] +testing = ["flufl.flake8", "importlib-resources (>=1.3) ; python_version < \"3.9\"", "packaging", "pyfakefs", "pytest (>=6)", "pytest-black (>=0.3.7) ; platform_python_implementation != \"PyPy\"", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=2.2)", "pytest-mypy (>=0.9.1) ; platform_python_implementation != \"PyPy\"", "pytest-perf (>=0.9.2)", "pytest-ruff"] [[package]] name = "importlib-resources" @@ -531,6 +557,8 @@ version = "6.0.1" description = "Read resources from Python packages" optional = false python-versions = ">=3.8" +groups = ["dev"] +markers = "python_version == \"3.8\"" files = [ {file = "importlib_resources-6.0.1-py3-none-any.whl", hash = "sha256:134832a506243891221b88b4ae1213327eea96ceb4e407a00d790bb0626f45cf"}, {file = "importlib_resources-6.0.1.tar.gz", hash = "sha256:4359457e42708462b9626a04657c6208ad799ceb41e5c58c57ffa0e6a098a5d4"}, @@ -541,7 +569,7 @@ zipp = {version = ">=3.1.0", markers = "python_version < \"3.10\""} [package.extras] docs = ["furo", "jaraco.packaging (>=9.3)", "jaraco.tidelift (>=1.4)", "rst.linker (>=1.9)", "sphinx (>=3.5)", "sphinx-lint"] -testing = ["pytest (>=6)", "pytest-black (>=0.3.7)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=2.2)", "pytest-mypy (>=0.9.1)", "pytest-ruff"] +testing = ["pytest (>=6)", "pytest-black (>=0.3.7) ; platform_python_implementation != \"PyPy\"", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=2.2)", "pytest-mypy (>=0.9.1) ; platform_python_implementation != \"PyPy\"", "pytest-ruff"] [[package]] name = "iniconfig" @@ -549,6 +577,7 @@ version = "2.0.0" description = "brain-dead simple config-ini parsing" optional = false python-versions = ">=3.7" +groups = ["dev"] files = [ {file = "iniconfig-2.0.0-py3-none-any.whl", hash = "sha256:b6a85871a79d2e3b22d2d1b94ac2824226a63c6b741c88f7ae975f18b6778374"}, {file = "iniconfig-2.0.0.tar.gz", hash = "sha256:2d91e135bf72d31a410b17c16da610a82cb55f6b0477d1a902134b24a455b8b3"}, @@ -560,6 +589,7 @@ version = "2.2.0" description = "Pythonic task execution" optional = false python-versions = ">=3.6" +groups = ["dev"] files = [ {file = "invoke-2.2.0-py3-none-any.whl", hash = "sha256:6ea924cc53d4f78e3d98bc436b08069a03077e6f85ad1ddaa8a116d7dad15820"}, {file = "invoke-2.2.0.tar.gz", hash = "sha256:ee6cbb101af1a859c7fe84f2a264c059020b0cb7fe3535f9424300ab568f6bd5"}, @@ -571,6 +601,7 @@ version = "3.3.0" description = "Utility functions for Python class constructs" optional = false python-versions = ">=3.8" +groups = ["dev"] files = [ {file = "jaraco.classes-3.3.0-py3-none-any.whl", hash = "sha256:10afa92b6743f25c0cf5f37c6bb6e18e2c5bb84a16527ccfc0040ea377e7aaeb"}, {file = "jaraco.classes-3.3.0.tar.gz", hash = "sha256:c063dd08e89217cee02c8d5e5ec560f2c8ce6cdc2fcdc2e68f7b2e5547ed3621"}, @@ -581,7 +612,7 @@ more-itertools = "*" [package.extras] docs = ["furo", "jaraco.packaging (>=9.3)", "jaraco.tidelift (>=1.4)", "rst.linker (>=1.9)", "sphinx (>=3.5)", "sphinx-lint"] -testing = ["pytest (>=6)", "pytest-black (>=0.3.7)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=2.2)", "pytest-mypy (>=0.9.1)", "pytest-ruff"] +testing = ["pytest (>=6)", "pytest-black (>=0.3.7) ; platform_python_implementation != \"PyPy\"", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=2.2)", "pytest-mypy (>=0.9.1) ; platform_python_implementation != \"PyPy\"", "pytest-ruff"] [[package]] name = "jeepney" @@ -589,6 +620,8 @@ version = "0.8.0" description = "Low-level, pure Python DBus protocol wrapper." optional = false python-versions = ">=3.7" +groups = ["dev"] +markers = "sys_platform == \"linux\"" files = [ {file = "jeepney-0.8.0-py3-none-any.whl", hash = "sha256:c0a454ad016ca575060802ee4d590dd912e35c122fa04e70306de3d076cce755"}, {file = "jeepney-0.8.0.tar.gz", hash = "sha256:5efe48d255973902f6badc3ce55e2aa6c5c3b3bc642059ef3a91247bcfcc5806"}, @@ -596,7 +629,7 @@ files = [ [package.extras] test = ["async-timeout", "pytest", "pytest-asyncio (>=0.17)", "pytest-trio", "testpath", "trio"] -trio = ["async_generator", "trio"] +trio = ["async_generator ; python_version == \"3.6\"", "trio"] [[package]] name = "jinja2" @@ -604,6 +637,7 @@ version = "3.1.2" description = "A very fast and expressive template engine." optional = false python-versions = 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python-versions = ">=3.6" +groups = ["dev"] files = [ {file = "twine-3.8.0-py3-none-any.whl", hash = "sha256:d0550fca9dc19f3d5e8eadfce0c227294df0a2a951251a4385797c8a6198b7c8"}, {file = "twine-3.8.0.tar.gz", hash = "sha256:8efa52658e0ae770686a13b675569328f1fba9837e5de1867bfe5f46a9aefe19"}, @@ -1523,35 +1638,26 @@ version = "4.7.1" description = "Backported and Experimental Type Hints for Python 3.7+" optional = false python-versions = ">=3.7" +groups = ["dev"] files = [ {file = "typing_extensions-4.7.1-py3-none-any.whl", hash = "sha256:440d5dd3af93b060174bf433bccd69b0babc3b15b1a8dca43789fd7f61514b36"}, {file = "typing_extensions-4.7.1.tar.gz", hash = "sha256:b75ddc264f0ba5615db7ba217daeb99701ad295353c45f9e95963337ceeeffb2"}, ] -[[package]] -name = "tzdata" -version = "2023.3" -description = "Provider of IANA time zone data" -optional = false -python-versions = ">=2" -files = [ - {file = "tzdata-2023.3-py2.py3-none-any.whl", hash = "sha256:7e65763eef3120314099b6939b5546db7adce1e7d6f2e179e3df563c70511eda"}, - {file = "tzdata-2023.3.tar.gz", hash = "sha256:11ef1e08e54acb0d4f95bdb1be05da659673de4acbd21bf9c69e94cc5e907a3a"}, -] - [[package]] name = "urllib3" version = "2.0.4" description = "HTTP library with thread-safe connection pooling, file post, and more." optional = false python-versions = ">=3.7" +groups = ["dev"] files = [ {file = "urllib3-2.0.4-py3-none-any.whl", hash = "sha256:de7df1803967d2c2a98e4b11bb7d6bd9210474c46e8a0401514e3a42a75ebde4"}, {file = "urllib3-2.0.4.tar.gz", hash = "sha256:8d22f86aae8ef5e410d4f539fde9ce6b2113a001bb4d189e0aed70642d602b11"}, ] [package.extras] -brotli = ["brotli (>=1.0.9)", "brotlicffi (>=0.8.0)"] +brotli = ["brotli (>=1.0.9) ; platform_python_implementation == \"CPython\"", "brotlicffi (>=0.8.0) ; platform_python_implementation != \"CPython\""] secure = ["certifi", "cryptography (>=1.9)", "idna (>=2.0.0)", "pyopenssl (>=17.1.0)", "urllib3-secure-extra"] socks = ["pysocks (>=1.5.6,!=1.5.7,<2.0)"] zstd = ["zstandard (>=0.18.0)"] @@ -1562,6 +1668,7 @@ version = "3.0.0" description = "Filesystem events monitoring" optional = false python-versions = ">=3.7" +groups = ["dev"] files = [ {file = "watchdog-3.0.0-cp310-cp310-macosx_10_9_universal2.whl", hash = "sha256:336adfc6f5cc4e037d52db31194f7581ff744b67382eb6021c868322e32eef41"}, {file = "watchdog-3.0.0-cp310-cp310-macosx_10_9_x86_64.whl", hash = "sha256:a70a8dcde91be523c35b2bf96196edc5730edb347e374c7de7cd20c43ed95397"}, @@ -1601,6 +1708,7 @@ version = "0.5.1" description = "Character encoding aliases for legacy web content" optional = false python-versions = "*" +groups = ["dev"] files = [ {file = "webencodings-0.5.1-py2.py3-none-any.whl", hash = "sha256:a0af1213f3c2226497a97e2b3aa01a7e4bee4f403f95be16fc9acd2947514a78"}, {file = "webencodings-0.5.1.tar.gz", hash = "sha256:b36a1c245f2d304965eb4e0a82848379241dc04b865afcc4aab16748587e1923"}, @@ -1612,6 +1720,7 @@ version = "0.41.1" description = "A built-package format for Python" optional = false python-versions = ">=3.7" +groups = ["dev"] files = [ {file = "wheel-0.41.1-py3-none-any.whl", hash = "sha256:473219bd4cbedc62cea0cb309089b593e47c15c4a2531015f94e4e3b9a0f6981"}, {file = "wheel-0.41.1.tar.gz", hash = "sha256:12b911f083e876e10c595779709f8a88a59f45aacc646492a67fe9ef796c1b47"}, @@ -1626,6 +1735,7 @@ version = "3.16.2" description = "Backport of pathlib-compatible object wrapper for zip files" optional = false python-versions = ">=3.8" +groups = ["dev"] files = [ {file = "zipp-3.16.2-py3-none-any.whl", hash = "sha256:679e51dd4403591b2d6838a48de3d283f3d188412a9782faadf845f298736ba0"}, {file = "zipp-3.16.2.tar.gz", hash = "sha256:ebc15946aa78bd63458992fc81ec3b6f7b1e92d51c35e6de1c3804e73b799147"}, @@ -1633,9 +1743,9 @@ files = [ [package.extras] docs = ["furo", "jaraco.packaging (>=9.3)", "jaraco.tidelift (>=1.4)", "rst.linker (>=1.9)", "sphinx (>=3.5)", "sphinx-lint"] -testing = ["big-O", "jaraco.functools", "jaraco.itertools", "more-itertools", "pytest (>=6)", "pytest-black (>=0.3.7)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=2.2)", "pytest-ignore-flaky", "pytest-mypy (>=0.9.1)", "pytest-ruff"] +testing = ["big-O", "jaraco.functools", "jaraco.itertools", "more-itertools", "pytest (>=6)", "pytest-black (>=0.3.7) ; platform_python_implementation != \"PyPy\"", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=2.2)", "pytest-ignore-flaky", "pytest-mypy (>=0.9.1) ; platform_python_implementation != \"PyPy\"", "pytest-ruff"] [metadata] -lock-version = "2.0" +lock-version = "2.1" python-versions = "^3.8" -content-hash = "e9d0af233c804d6e828561040925183cf76774c63023b3992d811ccbcd717889" +content-hash = "c07bf514e3b2fb5f4bb807630ef5cca5f93f3b3b0ef9e13b56bbdd88e8c78f46" diff --git a/pyproject.toml b/pyproject.toml index 58012af..07fa8ec 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -34,7 +34,7 @@ packages = [ python = "^3.8" colorlog = "^6.6.0" rstr = "^3.0.0" -gtfparse = "^1.2.1" +gtfparse = ">=1.2.1,<3.0.0" sortedcontainers = "^2.4.0" pytabix = "^0.1" pysam = "^0.21"