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clarify AE/EP
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README.md

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uv self update
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uv python pin 3.15
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uvx pre-commit install
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uvx pre-commit run --all-files
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npx markdownlint-cli2 --fix
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```

profile/README.md

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@@ -506,7 +506,8 @@ This organization is structured around roles:
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These repositories define the admissible representational space
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for structurally explainable systems.
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They are normative only in the sense of **defining structural constraints**, not interpretations.
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They are normative only in the sense of defining structural constraints,
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not interpretations.
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<details>
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<summary>See more</summary>
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### Accountable Entity and Evolution Specifications
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These repositories define the accountable-entity and evolution layers
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used by downstream structurally explainable information systems.
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Accountable Entities defines the entity-kind layer used by downstream
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information systems:
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Actor, Locus, Instrument, Event, Scope, and Observation.
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It references canonical identity-regime profiles defined in
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`se-theory-identity-regimes`; it does not define those profiles.
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| Repository | Purpose | Status |
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| --------------------------------------------------------------- | ----------------------------------------- | --------- |
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| [spec-ae](https://github.com/structural-explainability/spec-ae) | Accountable Entities and identity regimes | Normative |
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| [spec-ep](https://github.com/structural-explainability/spec-ep) | Graph evolution over accountable entities | Normative |
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Evolution Protocol defines graph evolution over accountable entities.
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Together, these specifications define reusable structural vocabularies for
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systems that need accountable-entity and evolution layers.
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### Interface (CEE)
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| Repository | Purpose | Status |
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| --------------------------------------------------------------- | ----------------------------------------------------------------------- | --------- |
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| [spec-ae](https://github.com/structural-explainability/spec-ae) | Accountable entity kinds; references canonical identity-regime profiles | Normative |
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| [spec-ep](https://github.com/structural-explainability/spec-ep) | Graph evolution over accountable entities | Normative |
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### Interface Specification (CEE)
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The Contextual Evidence and Explanation (CEE) layer defines
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a structural interface to the neutral substrate.
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| ----------------------------------------------------------------- | ------------------------------------------------------------- | --------- |
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| [spec-cee](https://github.com/structural-explainability/spec-cee) | Contextual evidence, explanation, attestation, and provenance | Normative |
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### Boundaries (GB / IB)
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### Boundary Specifications (GB / IB)
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These repositories define additional structural boundaries
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that operate relative to the neutral substrate.
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They do not alter identity, structure, or recorded change.
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They serve as guardrails that prevent interpretation from leaking into the neutral substrate.
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They prevent interpretation, governance status, or external authority claims
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from leaking into the neutral substrate.
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| Repository | Purpose | Status |
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| --------------------------------------------------------------- | -------------------------------------------------------- | --------- |
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| [spec-gb](https://github.com/structural-explainability/spec-gb) | Governance boundary for structural artifacts and actions | Normative |
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| [spec-ib](https://github.com/structural-explainability/spec-ib) | Interpretation boundary for external frameworks | Normative |
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### Informative
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### Informative Specification Materials
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| Repository | Purpose | Status |
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| --------------------------------------------------------------------------------- | --------------------------------------------------- | ----------- |
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for downstream systems that need them.
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They are reference implementation layers, not universal dependencies.
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| Repository | Purpose | CI | Description |
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| --------------------------------------------------------------------------------------- | --------------------------- | --------------------------------------------------------------------------------------------------------------------------- | ------------------------------------ |
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| [AccountableEntities](https://github.com/structural-explainability/AccountableEntities) | Entity-regime instantiation | ![CI](https://github.com/structural-explainability/AccountableEntities/actions/workflows/ci-lean.yml/badge.svg?branch=main) | Formalization of AE identity regimes |
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| [EvolutionProtocol](https://github.com/structural-explainability/EvolutionProtocol) | Neutral exchange substrate | ![CI](https://github.com/structural-explainability/EvolutionProtocol/actions/workflows/ci-lean.yml/badge.svg?branch=main) | Formalization of EP graph evolution |
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| Repository | Purpose | CI | Description |
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| --------------------------------------------------------------------------------------- | ----------------------------- | --------------------------------------------------------------------------------------------------------------------------- | ------------------------------------------------------------------------------------------------- |
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| [AccountableEntities](https://github.com/structural-explainability/AccountableEntities) | Accountable entity kinds | ![CI](https://github.com/structural-explainability/AccountableEntities/actions/workflows/ci-lean.yml/badge.svg?branch=main) | Lean formalization of six AE entity kinds and their mapping to canonical identity-regime profiles |
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| [EvolutionProtocol](https://github.com/structural-explainability/EvolutionProtocol) | Graph evolution over entities | ![CI](https://github.com/structural-explainability/EvolutionProtocol/actions/workflows/ci-lean.yml/badge.svg?branch=main) | Formalization of EP graph evolution |
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### Optional Interface Implementation (CEE)
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Systems may implement equivalent boundary-respecting structures without depending
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| Repository | Purpose | CI | Description |
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| ------------------------------------------------------- | ------------------- | ----------------------------------------------------------------------------------------------------------- | -------------------------------------------------------- |
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| [CEE](https://github.com/structural-explainability/CEE) | Explanation overlay | ![CI](https://github.com/structural-explainability/CEE/actions/workflows/ci-lean.yml/badge.svg?branch=main) | Structural forms for contextual explanation and evidence |
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| Repository | Purpose | CI | Description |
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| ------------------------------------------------------- | --------------------------------------------- | ----------------------------------------------------------------------------------------------------------- | ---------------------------------------------------------------------------------- |
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| [CEE](https://github.com/structural-explainability/CEE) | Contextual evidence and explanation interface | ![CI](https://github.com/structural-explainability/CEE/actions/workflows/ci-lean.yml/badge.svg?branch=main) | Structural forms for contextual explanation, evidence, attestation, and provenance |
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### Optional Boundary Implementations (GB / IB)
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| Repository | Purpose | CI | Description |
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| --------------------------------------------------------------------------------------------- | ----------------------- | ------------------------------------------------------------------------------------------------------------------------------ | -------------------------------------------------------------------------- |
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| [GovernanceBoundary](https://github.com/structural-explainability/GovernanceBoundary) | Governance boundary | ![CI](https://github.com/structural-explainability/GovernanceBoundary/actions/workflows/ci-lean.yml/badge.svg?branch=main) | Governance |
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| [GovernanceBoundary](https://github.com/structural-explainability/GovernanceBoundary) | Governance boundary | ![CI](https://github.com/structural-explainability/GovernanceBoundary/actions/workflows/ci-lean.yml/badge.svg?branch=main) | Structural boundary for governance artifacts and actions |
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| [InterpretationBoundary](https://github.com/structural-explainability/InterpretationBoundary) | Interpretation boundary | ![CI](https://github.com/structural-explainability/InterpretationBoundary/actions/workflows/ci-lean.yml/badge.svg?branch=main) | Conditions under which external frameworks may interpret substrate records |
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### Archived / Superseded Theory Repositories
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> ⚠️ The repositories below are archived. Active development has moved to
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> the `se-theory-*` series.
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| Repository | Purpose | CI | Description |
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| ------------------------------------------------------------------------------------------------- | ------------------------- | -------------------------------------------------------------------------------------------------------------------------------- | ----------------------------------------------------------------------------------------------------------------------------------------------- |
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| [StructuralExplainability](https://github.com/structural-explainability/StructuralExplainability) | Cross-cutting constraints | ![CI](https://github.com/structural-explainability/StructuralExplainability/actions/workflows/ci-lean.yml/badge.svg?branch=main) | Neutrality and conformance predicates |
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| [NeutralSubstrate](https://github.com/structural-explainability/NeutralSubstrate) | Neutrality theorem | ![CI](https://github.com/structural-explainability/NeutralSubstrate/actions/workflows/ci-lean.yml/badge.svg?branch=main) | Substrates stable under incompatible extensions must be pre-causal and pre-normative |
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| [IdentityRegimes](https://github.com/structural-explainability/IdentityRegimes) | Identity regimes | ![CI](https://github.com/structural-explainability/IdentityRegimes/actions/workflows/ci-lean.yml/badge.svg?branch=main) | Six identity-and-persistence regime (families) are necessary and sufficient for accountability-oriented substrates under neutrality assumptions |
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| Repository | Purpose | CI | Description |
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| ------------------------------------------------------------------------------------------------- | ------------------------- | -------------------------------------------------------------------------------------------------------------------------------- | ----------------------------------------------------------------------------------------------------------------------------- |
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| [StructuralExplainability](https://github.com/structural-explainability/StructuralExplainability) | Cross-cutting constraints | ![CI](https://github.com/structural-explainability/StructuralExplainability/actions/workflows/ci-lean.yml/badge.svg?branch=main) | Neutrality and conformance predicates |
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| [NeutralSubstrate](https://github.com/structural-explainability/NeutralSubstrate) | Neutrality theorem | ![CI](https://github.com/structural-explainability/NeutralSubstrate/actions/workflows/ci-lean.yml/badge.svg?branch=main) | Substrates stable under incompatible extensions must be pre-causal and pre-normative |
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| [IdentityRegimes](https://github.com/structural-explainability/IdentityRegimes) | Identity regimes | ![CI](https://github.com/structural-explainability/IdentityRegimes/actions/workflows/ci-lean.yml/badge.svg?branch=main) | Earlier formalization of six identity-and-persistence regime families as a necessary lower bound under neutrality assumptions |
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</details>
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