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Changelog.md

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# Changelog
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- V 1.5.3.2: fixed a bug in vcf2eigenstrat that would fail on VCFs with missing Quality values.
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- V 1.5.3.1: updated to latest GHC pedantic compilation
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- V 1.5.3: Upgraded to sequence-formats 1.7.0 introducing an option for plink popName encoding, and improved pileup-Parsing to allow for skip-reference characters
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- V 1.5.2: Fixed a bug with --samplePopName having to be entered after -p or -e. Fixed a bug in the sequence-formats dependency.

sequenceTools.cabal

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name: sequenceTools
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version: 1.5.3.1
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version: 1.5.3.2
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synopsis: A package with tools for processing DNA sequencing data
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description: The tools in this package process sequencing Data, in particular from ancient DNA sequencing libraries. Key tool in this package is pileupCaller, a tool to randomly sample genotypes from sequencing data.
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license: GPL-3

stack.yaml

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packages:
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- '.'
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extra-deps:
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# - sequence-formats-1.7.0
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- git: https://github.com/stschiff/sequence-formats
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commit: 88dc6f598d2152929e8e9e6ed371487954f26c1e
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- sequence-formats-1.8.0.0
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# - git: https://github.com/stschiff/sequence-formats
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# commit: 88dc6f598d2152929e8e9e6ed371487954f26c1e
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