stumpy/.github/workflows/github-actions.yml at 745bc308089c96ae235944331ba42548f73ef03e · stumpy-dev/stumpy · GitHub

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name: Tests
on:
  push:
    branches: main
  pull_request:
    branches: main
jobs:
  minimum-version-testing:
    runs-on: ${{ matrix.os }}
    strategy:
      matrix:
        os: [ubuntu-latest, macos-latest, windows-latest]
        python-version: ['3.9']
    steps:
      - uses: actions/checkout@v4
      - name: Set Up Python
        uses: actions/setup-python@v5
        with:
          python-version: ${{ matrix.python-version }}
      - name: Display Python Version
        run: python -c "import sys; print(sys.version)"
        shell: bash
      - name: Upgrade Pip
        run: python -m pip install --upgrade pip
        shell: bash
      - name: Generate Minimum Requirements File
        run: sed 's/>/=/g' requirements.txt | sed 's/$/\.*/g'  > requirements.min.txt
        shell: bash
      - name: Install Minimum Requirements
        run: python -m pip install --upgrade -r requirements.min.txt
        shell: bash
      - name: Install STUMPY And Other Dependencies
        run: python -m pip install --editable .[ci]
        shell: bash
      - name: Run Black
        run: black --check --diff ./
        shell: bash
      - name: Run Flake8
        run: flake8 ./
        shell: bash
      - name: Install and Link OpenMP
        run: |
             if [ "$RUNNER_OS" == "macOS" ]; then
                  echo "Installing OpenMP"
                  brew install libomp
                  echo "Linking OpenMP"
                  brew link --force libomp
                  echo "Find OpenMP Linking Location"
                  libfile=`brew list libomp --verbose | grep libomp.dylib`
                  echo $libfile
                  echo "Changing  @rpath for the omppool.cpython-x-darwin.so shared object to look in $libfile"
                  ls "$(python -c 'import site; print(site.getsitepackages()[0])')"/numba/np/ufunc/omppool.*.so | xargs install_name_tool -change @rpath/libomp.dylib $libfile
             fi
        shell: bash
      - name: Show Full Numba Environment
        run: python -m numba -s
        shell: bash
      - name: Run Unit Tests
        run: ./test.sh unit
        shell: bash
  unit-testing:
    runs-on: ${{ matrix.os }}
    strategy:
      matrix:
        os: [ubuntu-latest, macos-latest, windows-latest]
        python-version: ['3.9', '3.10', '3.11', '3.12']
    steps:
      - uses: actions/checkout@v4
      - name: Set Up Python
        uses: actions/setup-python@v5
        with:
          python-version: ${{ matrix.python-version }}
      - name: Display Python Version
        run: python -c "import sys; print(sys.version)"
        shell: bash
      - name: Upgrade Pip
        run: python -m pip install --upgrade pip
        shell: bash
      - name: Install STUMPY And Other Dependencies
        run: python -m pip install --editable .[ci]
        shell: bash
      - name: Run Black
        run: black --check --diff ./
        shell: bash
      - name: Run Flake8
        run: flake8 ./
        shell: bash
      - name: Install OpenMP
        run: |
             if [ "$RUNNER_OS" == "macOS" ]; then
                  echo "Installing OpenMP"
                  brew install libomp
                  echo "Linking OpenMP"
                  brew link --force libomp
                  echo "Find OpenMP Linking Location"
                  libfile=`brew list libomp --verbose | grep libomp.dylib`
                  echo $libfile
                  echo "Changing  @rpath for the omppool.cpython-x-darwin.so shared object to look in $libfile"
                  ls "$(python -c 'import site; print(site.getsitepackages()[0])')"/numba/np/ufunc/omppool.*.so | xargs install_name_tool -change @rpath/libomp.dylib $libfile
             fi
        shell: bash
      - name: Show Full Numba Environment
        run: python -m numba -s
        shell: bash
      - name: Run Unit Tests
        run: ./test.sh unit
        shell: bash
  coverage-testing:
    runs-on: ${{ matrix.os }}
    strategy:
      matrix:
        os: [ubuntu-latest, macos-latest, windows-latest]
        python-version: ['3.9', '3.10', '3.11', '3.12']
    steps:
      - uses: actions/checkout@v4
      - name: Set Up Python
        uses: actions/setup-python@v5
        with:
          python-version: ${{ matrix.python-version }}
      - name: Display Python Version
        run: python -c "import sys; print(sys.version)"
        shell: bash
      - name: Upgrade Pip
        run: python -m pip install --upgrade pip
        shell: bash
      - name: Install STUMPY And Other Dependencies
        run: python -m pip install --editable .[ci]
        shell: bash
      - name: Run Black
        run: black --check --diff ./
        shell: bash
      - name: Run Flake8
        run: flake8 ./
        shell: bash
      - name: Link OpenMP
        run: |
             if [ "$RUNNER_OS" == "macOS" ]; then
                  echo "Installing OpenMP"
                  brew install libomp
                  echo "Linking OpenMP"
                  brew link --force libomp
                  echo "Find OpenMP Linking Location"
                  libfile=`brew list libomp --verbose | grep libomp.dylib`
                  echo $libfile
                  echo "Changing  @rpath for the omppool.cpython-x-darwin.so shared object to look in $libfile"
                  ls "$(python -c 'import site; print(site.getsitepackages()[0])')"/numba/np/ufunc/omppool.*.so | xargs install_name_tool -change @rpath/libomp.dylib $libfile
             fi
        shell: bash
      - name: Show Full Numba Environment
        run: python -m numba -s
        shell: bash
      - name: Run Coverage Tests
        run: ./test.sh coverage
        shell: bash
      - name: Upload Coverage Data to Github
        uses: actions/upload-artifact@v4
        with:
          name: coverage-data-${{ matrix.os }}-${{ matrix.python-version }}
          path: .coverage.*
          include-hidden-files: true
          if-no-files-found: ignore
      - name: Generate Coverage Report
        run: ./test.sh report coverage.stumpy.json
        shell: bash
      - name: List Reports
        run: ls *json
        shell: bash
      - name: Get Coverage Percentage
        run: |
          export TOTAL=$(python -c "import json;print(json.load(open('coverage.stumpy.json'))['totals']['percent_covered_display'])")
          echo $TOTAL
        shell: bash
  coverage-aggregation:
    name: Combine and Check Coverage
    if: always()
    needs: coverage
    runs-on: ubuntu-latest
    steps:
      - uses: actions/checkout@v4
        with:
          python-version: '3.12'
      - uses: actions/download-artifact@v4
        with:
          pattern: coverage-data-*
          merge-multiple: true
      - name: Combine Coverage Files and Fail If Under 100%
        run: ls .coverage.*
        shell: bash
      - name: Generate Coverage Report
        run: ./test.sh report coverage.stumpy.json
        shell: bash
      - name: Get Coverage Percentage
        run: |
          export TOTAL=$(python -c "import json;print(json.load(open('coverage.stumpy.json'))['totals']['percent_covered_display'])")