Dataset Variables (part 2) (#9)

* first draft of TA variables

* add dic variable types

* update experiment and dataset in container

* add sediment, nonmeasured variables, and clean up existing variable hierarchy

* fix filenames min-cardinality bug

* include rangeclass descendents in jsonschema

* cleanup .gitignore

* remove range class descendents again

* add discrete pco2/fco2 variable

* rename DiscreteCO2Variable

* make standard gas single valued

* make gen-project

* fix typeo

* add hplc data

* add todo

* move analyzing instrument to DiscreteMeasuredVariable

* reset DiscreteCO2Variable with correct inheritance

* genproject

* rename std gas fields

* [refactor]: Experiment protocol updates (#10)

* rename principal_investigator field in experiment, update description for dosing_concentration.is_provided_as_a_file

* mark precision (in analzying instrument) as optional

* add height to vertical coverage

* make genproject

* add analyzing_instrument to sensor data (adding back, since it was removed by mistake)

* update sedient field titles & descriptions

* add genesis to calculated variable types

Author: clevinson

.gitignore

@@ -136,6 +136,5 @@ dmypy.json
 
 # Claude AI instruction set
 CLAUDE.md
-.beads/
 
 examples/

project.Makefile

@@ -21,3 +21,6 @@ ontologies/unit.ttl:
 
 enums: ontologies/sea_names.ttl ontologies/unit.ttl ontologies/platform_types.ttl
 	$(RUN) vskit expand -s src/oae_data_protocol/schema/dynamic_enums.yaml -o src/oae_data_protocol/schema/dynamic_enums_expanded.yaml --config vskit-config.yaml
+
+gen-all: gen-project
+	$(RUN) gen-typescript --output $(DEST)/typescript/oae_data_protocol.ts $(SOURCE_SCHEMA_PATH)