refactor: migrate to linkml-copier#27
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- Replace Poetry with uv, hatchling build backend - Replace Makefile with justfile (+ project.justfile for customizations) - Port gen-validation-schema (include_range_class_descendants=True) to project.justfile - Port dynamic enum pipeline (NERC C16/L06, QUDT) as fetch-* recipes - Port inject-version hook and gen-all wrapper - Pin linkml==1.8.7 / linkml-runtime==1.8.3 to preserve current generator output - Restore original config.yaml (includes: [jsonschema, python]) - Keep runtime deps: oaklib (+ schemasheets in dev) - Copy src/docs/files/* into docs/ (nav rewiring still TODO) - Delete old Makefile and project.Makefile
- Update mkdocs.yml nav to reference elements/ for generated class pages - Restore extra_css / extra_javascript assets - Rewrite ../ClassName.md links in custom docs to ../elements/ClassName.md - Rewrite top-level ClassName.md links in metadata-format.md and vocabularies.md - Fix ../model.md → ../elements/Model.md in projects-experiments/index.md - Pin .python-version and .mise.toml to Python 3.12 - Justfile: lint the entrypoint schema file, not the directory
…ore generated docs/schema/
- Hand-written pages live in src/docs/files/ (tracked in git) - docs/ is entirely gitignored, rebuilt on every `just gen-doc` - gen-doc writes flat into docs/, index.md renamed to OAEDataSchema.md, then src/docs/files/* is copied over (preserves hand-written home + CNAME) - Post-gen-doc sed rewrites section.md → section/index.md for custom explainers - Preserves existing URLs: schema.oaedata.org/Project/, /OAEDataSchema/, etc.
- README: replace make/poetry commands with just/uv equivalents, reference linkml-project-copier - CI: limit Python test matrix to 3.9-3.12 (matches requires-python <3.13) - .copier-answers.yml: fix placeholder project_description
…pier-answers.yml)
- Exclude mkdocs.yml from check-yaml (!!python/name tag) - Exclude generated datamodel from ruff/ruff-format - Exclude downloaded ontologies/ from typos and codespell - Exclude mkdocs.yml, dynamic_enums_expanded.yaml, examples/ from yamllint - Disable yamllint line-length rule (schema descriptions naturally long) - Fix extra blank lines in calibration.yaml and variable.yaml
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