fix(ci): resolve test failures - add workspace, coverage deps, minimatch import

- Add 'cli' to workspaces so root bun install installs CLI deps (fixes 'conf' missing)
- Add @vitest/coverage-v8 and update vitest to compatible v4.1.5
- Add minimatch@^9.0.5 dependency
- Fix minimatch imports to use named import for ESM compatibility
- Remove obsolete custom minimatch type declaration

Author: swadhinbiswas