Merge main into add-terraphim-tests branch

Resolved conflicts:
- Updated Cargo.toml exclude comment to be more descriptive
- Used main branch Cargo.lock with terraphim_agent package
- Kept comprehensive RELEASE_NOTES_v1.0.0.md from main branch
- Used main branch rolegraph lib.rs with serialization features
- Confirmed REPL_EXTRACTION_PLAN.md is in correct agent directory

Author: AlexMikhalev

.docs/summary-CLAUDE.md

@@ -19,7 +19,17 @@ Provides comprehensive guidance to Claude Code (claude.ai/code) when working wit
 - **Knowledge Graph System**: Thesaurus format, automata construction, rolegraph management
 - **AI Integration**: OpenRouter, Ollama support with LLM client abstraction
 
-## Recent Updates
+## Recent Updates (v1.0.0 Release)
+- **Multi-Language Package Ecosystem**: Added comprehensive Rust, Node.js, Python package information
+- **Package Manager Support**: Enhanced with Bun optimization for Node.js ecosystem
+- **CI/CD Infrastructure**: Updated with self-hosted runners and 1Password integration
+- **Grep.app Integration**: Added search across 500,000+ GitHub repositories
+- **MCP Server**: Complete Model Context Protocol implementation for AI integration
+- **Binary Update**: terraphim-tui → terraphim-agent with updated references
+- **Performance Metrics**: Added comprehensive benchmarks and optimization details
+- **Publishing Documentation**: Complete guides for multi-language package publishing
+
+## Legacy Updates
 - Added workspace structure section
 - Expanded crate documentation (agent systems, haystacks)
 - Added TUI build variations and feature flags

.docs/summary-README.md

@@ -17,16 +17,38 @@ Main project documentation for Terraphim AI, a privacy-first AI assistant that o
 - **Rolegraph**: Knowledge graph using Aho-Corasick automata for ranking
 
 ## Installation Options
+
+### 🎉 v1.0.0 Multi-Language Packages
+
+**🦀 Rust (crates.io)**:
+```bash
+cargo install terraphim_agent
+terraphim-agent --help
+```
+
+**📦 Node.js (npm)**:
+```bash
+npm install @terraphim/autocomplete
+# or with Bun
+bun add @terraphim/autocomplete
+```
+
+**🐍 Python (PyPI)**:
+```bash
+pip install terraphim-automata
+```
+
+### Traditional Installation
 - **Docker**: `docker run ghcr.io/terraphim/terraphim-server:latest`
 - **Homebrew**: `brew install terraphim/terraphim-ai/terraphim-ai`
-- **Quick Install**: `curl -fsSL https://raw.githubusercontent.com/terraphim/terraphim-ai/main/release/v0.2.3/install.sh | bash`
+- **Development**: `git clone && cargo run`
 
 ## Development Setup
 1. Clone repository
 2. Install pre-commit hooks: `./scripts/install-hooks.sh`
 3. Start backend: `cargo run`
 4. Start frontend: `cd desktop && yarn run dev` (web) or `yarn run tauri dev` (desktop)
-5. TUI: `cargo build -p terraphim_tui --features repl-full --release`
+5. TUI: `cargo build -p terraphim_tui --features repl-full --release && ./target/release/terraphim-agent`
 
 ## Important Details
 - Storage backends: Local by default (memory, dashmap, sqlite, redb); optional AWS S3 for cloud

.docs/summary-TESTING_SCRIPTS_README.md

@@ -3,6 +3,8 @@
 ## Purpose
 Comprehensive documentation for testing scripts used in Novel editor autocomplete integration with Terraphim's knowledge graph system. Provides automated testing workflows and service management.
 
+**Updated for v1.0.0**: Now includes testing for multi-language packages (Rust, Node.js, Python) and comprehensive validation of autocomplete functionality across all platforms.
+
 ## Key Scripts
 - **quick-start-autocomplete.sh**: Interactive menu with preset configurations (full, mcp, dev, test, status, stop)
 - **start-autocomplete-test.sh**: Main testing script with full control over services and configuration

.docs/summary-lessons-learned.md

@@ -42,6 +42,28 @@ Captures critical technical insights, development patterns, and lessons from Ter
 - **Categories**: Prompt injection, command injection, memory safety, network validation
 - **Coverage**: 99 comprehensive tests across multiple attack vectors
 
+**Pattern 6: Multi-Language Package Publishing Strategy**
+- **Context**: v1.0.0 release with Rust, Node.js, Python packages
+- **Learning**: Platform-specific bindings require different approaches but unified API design
+- **Rust (crates.io)**: Native publishing with comprehensive documentation
+- **Node.js (npm)**: NAPI bindings for zero-overhead native performance
+- **Python (PyPI)**: PyO3 bindings for maximum speed with universal wheels
+- **Key Success**: Consistent API design across all languages while leveraging platform strengths
+
+**Pattern 7: Comprehensive Multi-Package-Manager Support**
+- **Context**: Node.js ecosystem evolution beyond npm
+- **Learning**: Support multiple package managers for maximum reach
+- **Implementation**: npm + Bun optimization with performance benchmarking
+- **Benefits**: Faster installation (Bun), broader compatibility (npm), developer choice
+- **Testing**: Automated testing across all supported package managers
+
+**Pattern 8: CI/CD Infrastructure Migration**
+- **Context**: Earthly to GitHub Actions migration for self-hosted runners
+- **Learning**: Gradual migration with parallel systems reduces risk
+- **Approach**: Maintain Earthly while building GitHub Actions, then switch
+- **Key Benefits**: Self-hosted runners, 1Password integration, faster builds
+- **Security**: OIDC authentication for package publishing with secure token management
+
 ## Technical Insights
 
 **UI Development**:

.docs/summary-memories.md

@@ -12,6 +12,27 @@ Comprehensive development history and progress tracking for the Terraphim AI pro
 
 ## Critical Sections
 
+### v1.0.0 Major Release Achievements (2025-11-16)
+
+**Multi-Language Package Ecosystem (COMPLETE ✅)**:
+- **Rust terraphim_agent**: Published to crates.io with CLI/TUI interface
+- **Node.js @terraphim/autocomplete**: Published to npm with NAPI bindings and Bun support
+- **Python terraphim-automata**: Published to PyPI with PyO3 bindings
+- **10 Core Rust Crates**: All successfully published to crates.io
+- **Comprehensive CI/CD**: Self-hosted runners with 1Password integration
+
+**Enhanced Search Integration (COMPLETE ✅)**:
+- **Grep.app Integration**: Search across 500,000+ GitHub repositories
+- **Advanced Filtering**: Language, repository, and path-based filtering
+- **MCP Server**: Complete Model Context Protocol implementation
+- **Claude Code Hooks**: Automated workflows and integration templates
+
+**Documentation & Release (COMPLETE ✅)**:
+- **Comprehensive v1.0.0 Documentation**: README, release notes, API docs
+- **Multi-Language Installation Guides**: Step-by-step instructions
+- **GitHub Release**: Complete with changelog and installation instructions
+- **terraphim-agent Binary**: Successfully updated from terraphim-tui references
+
 ### Recent Major Achievements (2025-10-08)
 
 **TruthForge Phase 5 UI Development (COMPLETE ✅)**:

.docs/summary-scratchpad.md

@@ -10,22 +10,31 @@ Active task management and current work tracking for Terraphim AI development. D
 - **System Status**: Current health of various components
 - **Phase Planning**: Upcoming work and priorities
 
-## Current Status (Latest Update: October 18, 2025)
-
-**✅ Phase 1 Security Testing Complete**
-- 43 security tests implemented (19 in terraphim-ai, 24 in firecracker-rust)
-- All critical vulnerabilities fixed: prompt injection, command injection, unsafe memory, network injection
-- 28 tests passing on bigbox validation
-- Risk level reduced from HIGH to MEDIUM
-
-**🔄 Phase 2 Security Bypass Testing - Ready to Start**
-- **Objective**: Test effectiveness of implemented security controls
-- **Timeline**: October 18-25, 2025
-- **Focus Areas**:
-  - Advanced prompt injection bypass (encoding, context manipulation)
-  - Command injection bypass (shell metacharacter evasion)
-  - Memory safety bypass (buffer overflow attempts)
-  - Network security bypass (interface name spoofing)
+## Current Status (Latest Update: November 16, 2025)
+
+**🎉 v1.0.0 MAJOR RELEASE COMPLETE**
+- Multi-language package ecosystem successfully released
+- All 10 core Rust crates published to crates.io
+- Node.js @terraphim/autocomplete published to npm with Bun support
+- Python terraphim-automata published to PyPI
+- Comprehensive documentation and GitHub release completed
+- terraphim-tui successfully renamed to terraphim-agent across all references
+
+**✅ v1.0.0 Release Achievements**
+- **Multi-Language Support**: Rust, Node.js, Python packages available
+- **Enhanced Search**: Grep.app integration (500K+ GitHub repos)
+- **AI Integration**: Complete MCP server and Claude Code hooks
+- **Infrastructure**: Self-hosted CI/CD runners with 1Password integration
+- **Performance**: Sub-2s startup, sub-millisecond search, optimized binaries
+
+**🔄 Next Development Phase - Ready to Start**
+- **Objective**: Build upon v1.0.0 foundation with advanced features
+- **Timeline**: November 2025 onward
+- **Potential Focus Areas**:
+  - Enhanced WebAssembly support
+  - Plugin architecture for extensions
+  - Advanced AI model integrations
+  - Performance optimizations and benchmarks
 
 ## Critical Sections
 

.docs/summary.md

@@ -4,8 +4,8 @@
 
 Terraphim AI is a privacy-first, locally-running AI assistant featuring multi-agent systems, knowledge graph intelligence, and secure code execution in Firecracker microVMs. The project combines Rust-based backend services with vanilla JavaScript frontends, emphasizing security, performance, and production-ready architecture.
 
-**Current Status**: Production-ready with active development on advanced features
-**Primary Technologies**: Rust (async/tokio), Svelte/Vanilla JS, Firecracker VMs, OpenRouter/Ollama LLMs
+**Current Status**: v1.0.0 RELEASED - Production-ready with comprehensive multi-language package ecosystem
+**Primary Technologies**: Rust (async/tokio), Svelte/Vanilla JS, Firecracker VMs, OpenRouter/Ollama LLMs, NAPI, PyO3
 **Test Coverage**: 99+ comprehensive tests with 59 passing in main workspace
 
 ## System Architecture
@@ -252,6 +252,91 @@ cd desktop && yarn run check
 3. **Haystack Integration** (4 crates): atomic_client, clickup_client, query_rs_client, persistence
 4. **Infrastructure**: settings, tui, onepassword_cli, markdown_parser
 
+## 🎉 v1.0.0 Major Release Achievements
+
+### Multi-Language Package Ecosystem ✅
+
+**🦀 Rust - terraphim_agent (crates.io)**:
+- Complete CLI/TUI interface with REPL functionality
+- Sub-2 second startup times and 10MB optimized binary
+- Installation: `cargo install terraphim_agent`
+- Published with comprehensive documentation and examples
+
+**📦 Node.js - @terraphim/autocomplete (npm)**:
+- Native NAPI bindings with zero overhead
+- High-performance autocomplete engine using Aho-Corasick automata
+- Knowledge graph connectivity analysis and semantic search
+- Multi-platform support (Linux, macOS, Windows, ARM64)
+- Bun package manager optimization included
+- Installation: `npm install @terraphim/autocomplete`
+
+**🐍 Python - terraphim-automata (PyPI)**:
+- PyO3 bindings for maximum performance
+- Cross-platform wheels for all major platforms
+- Type hints and comprehensive documentation
+- Installation: `pip install terraphim-automata`
+
+### Enhanced Search Capabilities ✅
+
+**Grep.app Integration**:
+- Search across 500,000+ public GitHub repositories
+- Advanced filtering by language, repository, and path
+- Rate limiting and graceful error handling
+
+**Semantic Search Enhancement**:
+- Knowledge graph-powered semantic understanding
+- Context-aware relevance through graph connectivity
+- Multi-source integration (personal, team, public)
+
+### AI Integration & Automation ✅
+
+**MCP Server Implementation**:
+- Complete Model Context Protocol server for AI tool integration
+- All autocomplete and knowledge graph functions exposed as MCP tools
+- Transport support: stdio, SSE/HTTP with OAuth authentication
+
+**Claude Code Hooks**:
+- Automated workflows for seamless Claude Code integration
+- Template system for code analysis and evaluation
+- Quality assurance frameworks and comprehensive testing
+
+### Infrastructure Improvements ✅
+
+**CI/CD Migration**:
+- Complete migration from Earthly to GitHub Actions + Docker Buildx
+- Self-hosted runners for optimized build infrastructure
+- 1Password integration for secure token management
+- Multi-platform builds (Linux, macOS, Windows, ARM64)
+
+**10 Core Rust Crates Published**:
+1. terraphim_agent - Main CLI/TUI interface
+2. terraphim_automata - Text processing and autocomplete
+3. terraphim_rolegraph - Knowledge graph implementation
+4. terraphim_service - Main service layer
+5. terraphim_middleware - Haystack indexing and search
+6. terraphim_config - Configuration management
+7. terraphim_persistence - Storage abstraction
+8. terraphim_types - Shared type definitions
+9. terraphim_settings - Device and server settings
+10. terraphim_mcp_server - MCP server implementation
+
+### Performance Metrics ✅
+
+**Autocomplete Engine**:
+- Index Size: ~749 bytes for full engineering thesaurus
+- Search Speed: Sub-millisecond prefix search
+- Memory Efficiency: Compact serialized data structures
+
+**Knowledge Graph**:
+- Graph Size: ~856 bytes for complete role graphs
+- Connectivity Analysis: Instant path validation
+- Query Performance: Optimized graph traversal algorithms
+
+**Native Binaries**:
+- Binary Size: ~10MB (production optimized)
+- Startup Time: Sub-2 second CLI startup
+- Cross-Platform: Native performance on all supported platforms
+
 ## Development Patterns and Best Practices
 
 ### Learned Patterns (From lessons-learned.md)

.env.example

@@ -0,0 +1,11 @@
+# Environment Variables Example
+# Copy this file to .env and fill in the actual values
+
+# crates.io token for publishing Rust crates
+# Get this from 1Password: op read "op://TerraphimPlatform/crates.io.token/token"
+CARGO_REGISTRY_TOKEN=
+
+# Optional: Local development overrides
+# TERRAPHIM_CONFIG=./terraphim_engineer_config.json
+# TERRAPHIM_DATA_DIR=./data
+# LOG_LEVEL=debug

.github/workflows/ci-optimized.yml

@@ -207,7 +207,7 @@ jobs:
               # Test binaries
               ./target/${{ matrix.target }}/release/terraphim_server --version
               ./target/${{ matrix.target }}/release/terraphim_mcp_server --version
-              ./target/${{ matrix.target }}/release/terraphim-tui --version
+              ./target/${{ matrix.target }}/release/terraphim-agent --version
             "
 
       - name: Create .deb package