fix(usage-cli-commands): resolve clippy warnings for CI

- Fix LegacyTerm missing #[derive(Deserialize)] in terraphim_automata
- Remove clone_on_copy for u64 IDs in builder.rs
- Suppress dead_code warnings on deserialization-only structs (ZaiApiResponse, ZaiLimit, ZaiSubscription, ClaudeProvider)
- Remove unused imports (MetricLine, ProgressFormat) from claude.rs
- Replace redundant closures with variant constructors in store.rs
- Remove unnecessary i64-to-i64 cast in ExecutionRecord::duration_ms
- Add #[allow(dead_code)] on unused utility functions

Refs #229

Author: Terraphim CI

Cargo.lock

@@ -159,9 +159,8 @@ fn index_inner(name: String, messages: Vec<Message>) -> Thesaurus {
                 let concept_with_display = match current_concept {
                     Some(ref cwd) => {
                         // Create NormalizedTerm with display_value preserving original case
-                        let nterm =
-                            NormalizedTerm::new(cwd.concept.id.clone(), cwd.concept.value.clone())
-                                .with_display_value(cwd.display_name.clone());
+                        let nterm = NormalizedTerm::new(cwd.concept.id, cwd.concept.value.clone())
+                            .with_display_value(cwd.display_name.clone());
                         thesaurus.insert(cwd.concept.value.clone(), nterm.clone());
                         cwd
                     }
@@ -173,7 +172,7 @@ fn index_inner(name: String, messages: Vec<Message>) -> Thesaurus {
                 for synonym in synonyms {
                     // Synonyms also get the same display_value (the concept's original name)
                     let nterm = NormalizedTerm::new(
-                        concept_with_display.concept.id.clone(),
+                        concept_with_display.concept.id,
                         concept_with_display.concept.value.clone(),
                     )
                     .with_display_value(concept_with_display.display_name.clone());

crates/terraphim_automata/src/builder.rs

@@ -354,7 +354,9 @@ fn parse_thesaurus_json(contents: &str) -> Result<Thesaurus> {
     }
 
     #[derive(Deserialize)]
+    #[allow(dead_code)]
     struct LegacyTerm {
+        #[allow(dead_code)]
         id: u64,
         nterm: String,
         #[serde(default)]

crates/terraphim_automata/src/lib.rs

@@ -20,9 +20,10 @@ which = "6.0"
 terraphim_persistence = { path = "../terraphim_persistence", optional = true }
 terraphim_types = { path = "../terraphim_types" }
 terraphim_settings = { path = "../terraphim_settings" }
+opendal = { version = "0.54", optional = true }
 
 [features]
 default = ["persistence", "providers"]
-persistence = ["dep:terraphim_persistence"]  # Enable storage via terraphim_persistence
+persistence = ["dep:terraphim_persistence", "dep:opendal"]  # Enable storage via terraphim_persistence
 cli = ["dep:clap", "dep:colored", "dep:indicatif"]  # Enable CLI commands
 providers = ["dep:reqwest"]  # Enable external provider API fetchers