fix(desktop): restore KG autocomplete input on role switch

- Update ThemeSwitcher to detect KG using new type structure (knowledge_graph_local.path, automata_path)
- Fix typeahead store toggling on both initial config load and role change
- Update KGSearchInput placeholder to 'Search knowledge graph items'
- Add unit tests for typeahead rendering behavior
- Add E2E test for role switch autocomplete functionality
- Fix clippy warnings (regex in loops, unused field)
- Update biome config to include test files

Note: Pre-existing cargo check errors in examples/benches (test_utils imports) do not affect this fix

Author: AlexMikhalev

.docs/summary-Cargo.toml .docs/summary-Cargo.md.docs/summary-Cargo.toml renamed to .docs/summary-Cargo.md

@@ -137,7 +137,7 @@
 
 ---
 
-**Summary**: Release v1.0.0 is 75% complete with all infrastructure in place. 
+**Summary**: Release v1.0.0 is 75% complete with all infrastructure in place.
 Waiting for CI to pass, then ready to publish!
 
 **Kudos**: Excellent progress on first major release with signed Tauri updates! 🎊

.reports/ACCOMPLISHMENTS_SUMMARY.md

@@ -3,13 +3,13 @@
 ## ✅ Quick Fixes Completed
 
 ### Fix 1: Created .cargo/config.toml
-**Issue**: Package Release workflow failed with `sed: can't read .cargo/config.toml`  
-**Solution**: Created `.cargo/config.toml` with release profile configuration  
+**Issue**: Package Release workflow failed with `sed: can't read .cargo/config.toml`
+**Solution**: Created `.cargo/config.toml` with release profile configuration
 **Status**: ✅ Committed and pushed
 
 ### Fix 2: Cleaned package.json Dependencies
-**Issue**: 8 duplicate dependencies in optionalDependencies vs devDependencies  
-**Solution**: Removed all conflicting entries from optionalDependencies  
+**Issue**: 8 duplicate dependencies in optionalDependencies vs devDependencies
+**Solution**: Removed all conflicting entries from optionalDependencies
 **Status**: ✅ Committed and pushed
 
 ### Git Changes
@@ -26,7 +26,7 @@
 ### Will Retrigger:
 - New push to `release/v1.0.0` will trigger:
   - Package Release workflow
-  - Tauri Publish workflow  
+  - Tauri Publish workflow
   - CI workflows
 
 ## ⏳ Remaining Issues (Non-Blocking)
@@ -37,7 +37,7 @@ These are **warnings**, not errors, and should not block the build:
 1. `ConfigWizard.svelte:642` - Label without for attribute
 2. `ConfigWizard.svelte:901` - Self-closing textarea
 3. `SessionList.svelte:219` - Button missing aria-label
-4. `ContextEditModal.svelte:187` - Label without associated control  
+4. `ContextEditModal.svelte:187` - Label without associated control
 5. `KGSearchModal.svelte:708` - Div with keydown needs ARIA role
 
 **Action**: Monitor if build treats these as errors. If so, apply manual fixes from plan.
@@ -96,6 +96,6 @@ gh run watch --repo terraphim/terraphim-ai
 
 ---
 
-**Status**: Fixes pushed, monitoring CI  
-**Next Check**: 19:45 UTC  
+**Status**: Fixes pushed, monitoring CI
+**Next Check**: 19:45 UTC
 **Owner**: @AlexMikhalev

.reports/CI_FIX_APPLIED.md

@@ -3,7 +3,7 @@
 ## Issue Summary
 The public `terraphim-ai` repository has dead code warnings for several methods in `crates/terraphim_middleware/src/haystack/query_rs.rs`:
 - `should_fetch_url()` - line 48
-- `get_fetched_count()` - line 72  
+- `get_fetched_count()` - line 72
 - `normalize_document_id()` - line 201
 - `fetch_and_scrape_content()` - line 336
 - `scrape_content()` - line 417
@@ -44,7 +44,7 @@ The public repository has a **SIMPLIFIED** version that:
 
 The private repository has:
 - `FetchStats` struct (lines 14-25) - tracks fetch success/failure
-- `PersistenceStats` struct (lines 28-41) - tracks cache hits/misses  
+- `PersistenceStats` struct (lines 28-41) - tracks cache hits/misses
 - Full content enhancement logic with `disable_content_enhancement` flag
 - Active usage of all the "dead" methods
 

.reports/DEAD_CODE_INVESTIGATION.md

@@ -20,7 +20,7 @@
 - ✅ **Fix 4**: Installed postcss dependencies
 - ✅ **Fix 5**: Suppressed accessibility warnings in vite config
 
-**Commits**: 
+**Commits**:
 - `b03f48f0` - CI workflow fixes
 - `ab6a8540` - Build improvements (SCSS + warnings)
 
@@ -36,17 +36,17 @@
 ### GitHub Actions Status
 **Workflows Running**: 3 workflows still executing from earlier push (53+ minutes)
 - Earthly CI/CD
-- CI Native  
+- CI Native
 - CI Optimized
 
 **Not Yet Retriggered**: Latest fixes (commits b03f48f0, ab6a8540) not pushed yet
 
 ### Build Issues Discovered
 
 #### Critical: svelte-jsoneditor Invalid HTML
-**Error**: `<tr>` cannot be direct child of `<table>` in `TransformWizard.svelte:94`  
-**Impact**: Build fails with compilation error  
-**Cause**: Dependency (svelte-jsoneditor) has invalid HTML structure  
+**Error**: `<tr>` cannot be direct child of `<table>` in `TransformWizard.svelte:94`
+**Impact**: Build fails with compilation error
+**Cause**: Dependency (svelte-jsoneditor) has invalid HTML structure
 **Status**: ⚠️ **BLOCKING LOCAL BUILD**
 
 **Potential Solutions**:
@@ -58,8 +58,8 @@
 ## 📋 Remaining TODOs (3)
 
 ### 1. ⚠️ Fix svelte-jsoneditor Build Error (CRITICAL)
-**Priority**: HIGH - Blocks local testing  
-**Estimated Time**: 30 min  
+**Priority**: HIGH - Blocks local testing
+**Estimated Time**: 30 min
 **Options**:
 ```bash
 # Option A: Downgrade
@@ -76,7 +76,7 @@ yarn remove svelte-jsoneditor
 ```
 
 ### 2. Build and Test Tauri Locally
-**Status**: Blocked by svelte-jsoneditor error  
+**Status**: Blocked by svelte-jsoneditor error
 **After Fix**:
 ```bash
 cd desktop
@@ -85,8 +85,8 @@ yarn tauri build  # Generate .dmg/.app
 ```
 
 ### 3. Review/Merge PRs #277 & #268
-**Status**: Deferred until v1.0.0 published  
-**Reason**: Both have failing CI, focus on release first  
+**Status**: Deferred until v1.0.0 published
+**Reason**: Both have failing CI, focus on release first
 **Action**: Merge to main after v1.0.0 ships
 
 ## 🚀 Next Actions (Priority Order)
@@ -231,5 +231,5 @@ Breakdown:
 
 **Confidence**: 80% can release today if jsoneditor issue resolved quickly.
 
-**Owner**: @AlexMikhalev  
+**Owner**: @AlexMikhalev
 **Last Updated**: 2025-11-04 19:20 UTC

.reports/FINAL_COMPREHENSIVE_STATUS.md

@@ -1,6 +1,6 @@
 # Terraphim AI v1.0.0 - Final Validation Status
-**Date:** 2025-11-05  
-**Time:** 14:07 GMT  
+**Date:** 2025-11-05
+**Time:** 14:07 GMT
 **Build Completion:** SUCCESSFUL (Core Components)
 
 ---
@@ -12,7 +12,7 @@
 **Test Execution Complete:**
 ```
 terraphim_middleware:   5/5 tests ✅
-terraphim_service:    112/112 tests ✅  
+terraphim_service:    112/112 tests ✅
 terraphim_automata:    13/13 tests ✅
 terraphim_rolegraph:    7/7 tests ✅
 terraphim_persistence: 25/25 tests ✅
@@ -56,7 +56,7 @@ Features:
 
 **Binary Functionality:**
 - ✅ CLI argument parsing working
-- ✅ Help system operational  
+- ✅ Help system operational
 - ✅ Version detection working
 - ✅ Ready for server startup testing
 
@@ -108,7 +108,7 @@ cargo build -p terraphim_tui --lib --features repl-full
 
 **Binary Build:**
 ```bash
-cargo build -p terraphim_tui --features repl-full  
+cargo build -p terraphim_tui --features repl-full
 ❌ FAILED - 24 compilation errors
 ```
 
@@ -279,7 +279,7 @@ Overall Release Readiness:   🟡  80%
 **Rationale:**
 - Core functionality is PROVEN (162/162 tests)
 - Server binary is WORKING
-- QueryRs sync is COMPLETE  
+- QueryRs sync is COMPLETE
 - All critical features validated
 
 **Known Limitations:**
@@ -324,10 +324,10 @@ Overall Release Readiness:   🟡  80%
 
 **The core of Terraphim AI is SOLID and OPERATIONAL.**
 
-✅ **162 unit tests passing**  
-✅ **Server binary built and functional**  
-✅ **QueryRs sync complete with all features active**  
-✅ **All critical algorithms validated**  
+✅ **162 unit tests passing**
+✅ **Server binary built and functional**
+✅ **QueryRs sync complete with all features active**
+✅ **All critical algorithms validated**
 ✅ **Clean code quality metrics**
 
 The issues that remain are:

.reports/FINAL_VALIDATION_STATUS.md

@@ -1,13 +1,13 @@
 # Terraphim AI v1.0.0 - Functional Validation Report
-**Date:** 2025-11-05  
-**Branch:** release/v1.0.0  
+**Date:** 2025-11-05
+**Branch:** release/v1.0.0
 **Test Duration:** ~30 minutes
 
 ## Executive Summary
 
-✅ **CORE FUNCTIONALITY: FULLY OPERATIONAL**  
-⚠️ **BUILD SYSTEM: Dependency issue in html2md (external)**  
-✅ **UNIT TESTS: 162+ tests passing**  
+✅ **CORE FUNCTIONALITY: FULLY OPERATIONAL**
+⚠️ **BUILD SYSTEM: Dependency issue in html2md (external)**
+✅ **UNIT TESTS: 162+ tests passing**
 ✅ **CODE QUALITY: All formatting and core clippy checks pass**
 
 ## Test Results by Component
@@ -17,7 +17,7 @@
 #### terraphim_middleware (5/5 tests passed)
 ```
 ✓ test_cache_key_generation
-✓ test_normalize_query_for_id  
+✓ test_normalize_query_for_id
 ✓ test_perplexity_config_parsing
 ✓ test_generate_title_from_query
 ✓ test_extract_stub
@@ -77,7 +77,7 @@ cargo fmt --all -- --check
 ```
 **Result:** ✅ All code properly formatted
 
-#### Core Library Compilation  
+#### Core Library Compilation
 ```bash
 cargo build --workspace --lib
 ```
@@ -106,9 +106,9 @@ cargo clippy --workspace --lib --all-features
 ### 4. Known Issues
 
 #### External Dependency Issue ⚠️
-**Package:** html2md (external crate)  
-**Impact:** Blocks release binary builds for terraphim_server and terraphim_tui  
-**Severity:** Medium - does not affect core functionality or library code  
+**Package:** html2md (external crate)
+**Impact:** Blocks release binary builds for terraphim_server and terraphim_tui
+**Severity:** Medium - does not affect core functionality or library code
 **Workaround Options:**
 1. Update html2md dependency version
 2. Fork and patch html2md
@@ -126,7 +126,7 @@ This appears to be a Rust edition 2024 compatibility issue with the html2md crat
 
 ✅ **All Core Libraries**
 - Search and indexing
-- Knowledge graph construction  
+- Knowledge graph construction
 - Autocomplete and fuzzy search
 - Document persistence
 - Configuration management
@@ -192,5 +192,5 @@ The core functionality of Terraphim AI is **fully validated and operational**. A
 
 The blocking issue is an **external dependency (html2md)** that prevents binary compilation. This does not affect the core library functionality but does block end-to-end testing of complete applications.
 
-**Confidence Level: HIGH** for core libraries  
+**Confidence Level: HIGH** for core libraries
 **Confidence Level: MEDIUM** for full release (pending html2md fix)

.reports/FUNCTIONAL_VALIDATION_REPORT.md

@@ -15,9 +15,9 @@
 ## Root Causes Identified
 
 ### Issue 1: Missing .cargo/config.toml
-**Workflow**: Package Release  
-**Error**: `sed: can't read .cargo/config.toml: No such file or directory`  
-**Line**: Step "Temporarily disable panic abort for building"  
+**Workflow**: Package Release
+**Error**: `sed: can't read .cargo/config.toml: No such file or directory`
+**Line**: Step "Temporarily disable panic abort for building"
 **Impact**: Workflow fails at line 52 before building
 
 **Fix**:
@@ -37,8 +37,8 @@ EOF
 ```
 
 ### Issue 2: Svelte Accessibility Warnings (Tauri Build)
-**Workflow**: Publish Tauri with Auto-Update  
-**Errors**: Multiple accessibility warnings in Svelte components  
+**Workflow**: Publish Tauri with Auto-Update
+**Errors**: Multiple accessibility warnings in Svelte components
 **Impact**: Build may treat warnings as errors
 
 **Files Needing Fixes**:
@@ -65,7 +65,7 @@ EOF
 ```
 
 ### Issue 3: Package.json Dependency Conflicts
-**Warnings**: Multiple collisions between optionalDependencies and devDependencies  
+**Warnings**: Multiple collisions between optionalDependencies and devDependencies
 **Impact**: May cause npm/yarn resolution issues
 
 **Conflicting Packages**:
@@ -142,7 +142,7 @@ sed -i 's/<textarea \([^>]*\)\/>/     <textarea \1><\/textarea>/g' desktop/src/l
 ```bash
 cd desktop
 # Remove duplicates from optionalDependencies that are in devDependencies
-jq 'del(.optionalDependencies["@tauri-apps/cli"], 
+jq 'del(.optionalDependencies["@tauri-apps/cli"],
         .optionalDependencies["@testing-library/jest-dom"],
         .optionalDependencies["@testing-library/svelte"],
         .optionalDependencies["dotenv"],

.reports/GITHUB_ACTIONS_FIX_PLAN.md

@@ -7,7 +7,7 @@
 - ✅ Updated `tauri.conf.json` with public key for signed updates
 - ✅ Bumped version to 1.0.0 across all files:
   - `desktop/src-tauri/Cargo.toml`: 0.1.0 → 1.0.0
-  - `desktop/src-tauri/tauri.conf.json`: 0.3.0 → 1.0.0  
+  - `desktop/src-tauri/tauri.conf.json`: 0.3.0 → 1.0.0
   - `desktop/package.json`: 0.3.0 → 1.0.0
 
 ### Git & GitHub
@@ -28,7 +28,7 @@
 ### GitHub Actions
 - ⚙️ CI workflows triggered by v1.0.0 tag:
   - Earthly CI/CD: Queued
-  - CI Native: Queued  
+  - CI Native: Queued
   - CI Optimized: Queued
   - Package Release: Failed (investigating)
   - Publish Tauri: Failed (build issues)
@@ -96,6 +96,6 @@ Once release is published:
 
 ---
 
-**Status**: Release prepared but waiting for CI to complete successfully.  
-**Next Action**: Fix build issues and rerun workflows.  
+**Status**: Release prepared but waiting for CI to complete successfully.
+**Next Action**: Fix build issues and rerun workflows.
 **ETA**: Complete once CI passes (likely within 24 hours).