fix: stabilize pr-586 on main by resolving ci blockers

Author: AlexMikhalev

Cargo.lock

@@ -1,7 +1,7 @@
 [package]
 name = "terraphim_automata_py"
 version = "1.0.0"
-edition.workspace = true
+edition = "2024"
 authors = ["Terraphim Contributors"]
 description = "Python bindings for terraphim_automata - Fast autocomplete and text processing for knowledge graphs"
 documentation = "https://terraphim.ai"

crates/terraphim_automata_py/Cargo.toml

@@ -95,7 +95,7 @@ impl KgNormalizer {
                     let path = entry.path();
                     if path.is_dir() {
                         visit_dir(&path, docs);
-                    } else if path.extension().map_or(false, |e| e == "md") {
+                    } else if path.extension().is_some_and(|e| e == "md") {
                         if let Ok(content) = fs::read_to_string(&path) {
                             let (title, tags, linked_terms) = parse_markdown_frontmatter(&content);
                             let doc = CorpusDocument {
@@ -272,9 +272,9 @@ fn parse_markdown_frontmatter(content: &str) -> (String, Vec<String>, Vec<String
     let mut tags = Vec::new();
     let mut linked_terms = Vec::new();
 
-    if content.starts_with("---") {
-        if let Some(end) = content[3..].find("---") {
-            let frontmatter = &content[3..end + 3];
+    if let Some(stripped) = content.strip_prefix("---") {
+        if let Some(end) = stripped.find("---") {
+            let frontmatter = &stripped[..end];
             for line in frontmatter.lines() {
                 let line = line.trim();
                 if line.starts_with("title:") {
@@ -314,8 +314,8 @@ fn parse_markdown_frontmatter(content: &str) -> (String, Vec<String>, Vec<String
     if title.is_empty() {
         for line in content.lines() {
             let trimmed = line.trim();
-            if trimmed.starts_with("# ") {
-                title = trimmed[2..].to_string();
+            if let Some(stripped) = trimmed.strip_prefix("# ") {
+                title = stripped.to_string();
                 break;
             }
         }
@@ -342,8 +342,8 @@ fn extract_terms_from_content(content: &str) -> Vec<String> {
     // Extract headers
     for line in content.lines() {
         let trimmed = line.trim();
-        if trimmed.starts_with("## ") {
-            let header = trimmed[3..].trim();
+        if let Some(stripped) = trimmed.strip_prefix("## ") {
+            let header = stripped.trim();
             // Split header into potential terms
             for word in header.split(&[',', '-', '/'][..]) {
                 let word = word.trim();

crates/terraphim_types/examples/kg_normalization.rs

@@ -72,7 +72,7 @@ fn example_hgnc_normalization() {
 
 fn example_coverage_signal() {
     // Create entities with varying grounding using string-based entity_type
-    let entities = vec![
+    let entities = [
         ExtractedEntity {
             entity_type: "cancer_diagnosis".to_string(),
             raw_value: "non-small cell lung cancer".to_string(),

crates/terraphim_types/examples/ontology_usage.rs

@@ -2070,25 +2070,20 @@ pub struct AgentCommunication {
 // ============================================================================
 
 /// Normalization method used for grounding
-#[derive(Debug, Clone, Copy, PartialEq, Eq, Serialize, Deserialize)]
+#[derive(Debug, Clone, Copy, PartialEq, Eq, Serialize, Deserialize, Default)]
 #[serde(rename_all = "snake_case")]
 pub enum NormalizationMethod {
     /// Exact match via Aho-Corasick
+    #[default]
     Exact,
     /// Fuzzy match via Levenshtein or Jaro-Winkler
     Fuzzy,
     /// Graph rank-based prioritization
     GraphRank,
 }
 
-impl Default for NormalizationMethod {
-    fn default() -> Self {
-        NormalizationMethod::Exact
-    }
-}
-
 /// Grounding metadata for normalized terms (Dynamic Ontology)
-#[derive(Debug, Clone, Serialize, Deserialize)]
+#[derive(Debug, Clone, Serialize, Deserialize, Default)]
 pub struct GroundingMetadata {
     /// Canonical URI from ontology (NCIt, HGNC, etc.)
     pub normalized_uri: Option<String>,
@@ -2121,18 +2116,6 @@ impl GroundingMetadata {
     }
 }
 
-impl Default for GroundingMetadata {
-    fn default() -> Self {
-        Self {
-            normalized_uri: None,
-            normalized_label: None,
-            normalized_prov: None,
-            normalized_score: None,
-            normalized_method: None,
-        }
-    }
-}
-
 /// Coverage governance signal
 #[derive(Debug, Clone, Serialize, Deserialize)]
 pub struct CoverageSignal {

crates/terraphim_types/src/lib.rs

@@ -11,7 +11,7 @@ crate-type = ["cdylib"]
 [dependencies]
 # Default enable napi4 feature, see https://nodejs.org/api/n-api.html#node-api-version-matrix
 napi = { version = "3.8.3", default-features = false, features = ["napi8", "tokio_rt"] }
-napi-derive = "2.12.2"
+napi-derive = "3.5.2"
 serde_json = { workspace = true }
 terraphim_automata = { path = "../crates/terraphim_automata", default-features = false }
 terraphim_service = { path = "../crates/terraphim_service" }