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tidy print altExp slot #125

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tidy print altExp slot #125

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5ac207e
test change print_method.R
Biomiha Aug 23, 2023
c1db700
Update print_method.R
Biomiha Aug 23, 2023
5a5b71b
Update print_method.R
Biomiha Aug 23, 2023
67a48f0
Update print_method.R
Biomiha Aug 23, 2023
c68e190
Merge branch 'master' into rebase-solve-conflicts
stemangiola Dec 6, 2023
d26e02a
Merge pull request #1 from stemangiola/rebase-solve-conflicts
Biomiha Jan 1, 2024
2e80868
Merge branch 'tidyomics:master' into master
Biomiha Mar 19, 2026
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17 changes: 12 additions & 5 deletions R/print_method.R
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Original file line number Diff line number Diff line change
Expand Up @@ -21,6 +21,8 @@ tbl_format_header.tidySingleCellExperiment <- function(x, setup, ...) {

number_of_features <- x |> attr("number_of_features")
assay_names <- x |> attr("assay_names")
altExpNames <- x |> attr("altExpNames")


# Change name
named_header <- setup$tbl_sum
Expand All @@ -33,11 +35,14 @@ tbl_format_header.tidySingleCellExperiment <- function(x, setup, ...) {
align(paste0(names2(named_header), ":"), space=NBSP),
" ", named_header) %>%
# Add further info single-cell
append(sprintf(
"\033[90m Features=%s | Cells=%s | Assays=%s\033[39m",
number_of_features, nrow(x),
paste(assay_names, collapse=", ")
), after=1)

append(sprintf(
"\033[90m Features=%s | Cells=%s | Assays=%s | altExpNames=%s\033[39m",
number_of_features, nrow(x),
paste(assay_names, collapse=", "),
if(length(nchar(altExpNames)) > 0) paste(altExpNames, collapse=", ") else {"NULL"}
), after=1)

}
style_subtle(pillar___format_comment(header, width=setup$width))
}
Expand All @@ -58,13 +63,15 @@ tbl_format_header.tidySingleCellExperiment <- function(x, setup, ...) {
#'
#' @importFrom vctrs new_data_frame
#' @importFrom SummarizedExperiment assayNames
#' @importFrom SingleCellExperiment altExpNames
#' @export
print.SingleCellExperiment <- function(x, ..., n=NULL, width=NULL) {
x |>
as_tibble(n_dimensions_to_return=5) |>
new_data_frame(class=c("tidySingleCellExperiment", "tbl")) %>%
add_attr(nrow(x), "number_of_features") %>%
add_attr(assayNames(x), "assay_names") %>%
add_attr(altExpNames(x), "altExpNames") %>%
print()

invisible(x)
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