Release v0.0.133 - Fix extension commands refresh

Author: kanfil

CHANGELOG.md

@@ -7,6 +7,12 @@ All notable changes to the Specify CLI and templates are documented here.
 The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/),
 and this project adheres to to [Semantic Versioning](https://semver.org/spec/v2.0.0/).
 
+## [0.0.133] - 2026-03-13
+
+### Fixed
+
+- **Extension commands refresh on init**: Re-running `specify init` now properly refreshes extension command files via `_ensure_commands_for_agent` (reverted broken remove/reinstall approach that caused "Manifest not found" errors)
+
 ## [0.0.132] - 2026-03-13
 
 ### Fixed

pyproject.toml

@@ -1,6 +1,6 @@
 [project]
 name = "agentic-sdlc-specify-cli"
-version = "0.0.132"
+version = "0.0.133"
 description = "Specify CLI, part of GitHub Spec Kit. A tool to bootstrap your projects for Spec-Driven Development (SDD)."
 requires-python = ">=3.11"
 dependencies = [

src/specify_cli/__init__.py

@@ -2743,10 +2743,13 @@ def install_bundled_extensions(
             continue
 
         try:
-            # Always install to ensure latest version
-            # Remove existing extension first to allow reinstall (install_from_directory rejects existing)
+            # Check if already installed - skip to avoid issues with source directory
+            # Commands are refreshed via _ensure_commands_for_agent instead
             if manager.registry.is_installed(ext_name):
-                manager.remove(ext_name, keep_config=True)
+                skipped.append(f"{ext_name} (existing)")
+                continue
+
+            # Install from bundled directory
             manager.install_from_directory(ext_dir, speckit_version)
             installed.append(ext_name)
         except ExtensionError as e: