API for linked biological knowledge

PyINE is a research framework for scalable elicitation and oversight of LLM reasoning, built on instrumented Python programs as a verifiable execution substrate.

Saccharomyces cerevisiae information, gene calling and ORF identification assistant

Clinical Measurement Ontology (CMO) maintained by RGD

Synthetic-document fine-tuning on Qwen2.5-7B: a controlled study of whether SDF installs sandbagging, finding a layered recognition/generation/behavior dissociation.

Experimental Condition Ontology maintained by RGD

Analyses for "Diverse logics and grammar encode notochord enhancers" study to be featured in Cell Reports

Code and raw data for *Galaxea fascicularis* microbiome data analysis

Measurement method ontology maintained by RGD

Electrophysiological analysis and contraction pulse (CP) sorting from MEA recordings in Hydra vulgaris

A Defense-in-Depth AI Control Sandbox using Docker, seccomp-bpf, and Paraphrasing to neutralize Model Organisms of Deception

A model-organism benchmark for misalignment and oversight failures in biomedical AI research agents.

Emergent Misalignmently misaligned or confidently incorrect? Studied if these models are too incapable to be harmful. 3rd / 8, ARENA 7.0 Capstone

A controllable model of subliminal learning via log-linear signal accumulation

A structured model and likelihood approach to estimate yeast prion propagon replication rates and their asymmetric transmission

A production-grade 7-node autonomous agent DAG with fail-closed safety, O-R-A-V semantic evaluation, and a self-improving RL data flywheel.