Ontology for the description of human clinical features

[WACV 2023] Information and scripts for the CropAndWeed Dataset

An interactive corn plant point cloud segmentation and annotation software (version 2.0)

Self-Supervised Vision Transformers for multiplexed imaging datasets

Plant Phenotyping APP

Phenomenal: An automatic open source library for 3D shoot architecture reconstruction and analysis for image-based plant phenotyping

Minimum Information About a Plant Phenotyping Experiment

a fast and automatic segmentation pipeline for point cloud of maize shoots

Digital Imaging of Root Traits: Extract trait measurements from images of monocot and dicot roots.

3-Demeter Capture is a tool for building 3-D point clouds from images

Sentinel-2 Crop Trait Retrieval Using Physiological and Phenological Priors from Field Phenotyping (Graf et al., 2023, RSE)

HistoJS: Web-Based Analytical Tool for Multiplexed Images. Limited Github Online Demo 👇

Software program for generating synthetic datasets for genotypes and phenotypes

Standard terms for annotating mammalian phenotypic data

Web-interface to the Biofuel Ecophysiological Traits and Yields Database (used by PEcAn and TERRA REF)

Internationalisation of the HPO content

Implementation of the 3D reconstruction pipeline optimized for plant branching structures.

The AMRgen package provides tools for interpreting antimicrobial resistance (AMR) genes, integrating genomic data with phenotypic antimicrobial susceptibility testing (AST) data, and calculating genotype-phenotype associations.

PhenoSV: Interpretable phenotype-aware model for the prioritization of genes affected by structural variants.