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submit_CNmap.sh
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36 lines (35 loc) · 11.8 KB
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qsub -N CNmapACC.bed -q LowMemShortterm.q -l h_vmem=16G -o /mnt/lustre/users/k1801782/dataset/CNV/log/log_ACC.bed.out -e /mnt/lustre/users/k1801782/dataset/CNV/log/log_ACC.bed.err /mnt/lustre/users/k1801782/dataset/SKCM_control/annotation_scripts_test2/run.sh -c ACC -s /mnt/lustre/users/k1801782/dataset/Annotation_individual_cancers/ACC
qsub -N CNmapBLCA.bed -q LowMemShortterm.q -l h_vmem=16G -o /mnt/lustre/users/k1801782/dataset/CNV/log/log_BLCA.bed.out -e /mnt/lustre/users/k1801782/dataset/CNV/log/log_BLCA.bed.err /mnt/lustre/users/k1801782/dataset/SKCM_control/annotation_scripts_test2/run.sh -c BLCA -s /mnt/lustre/users/k1801782/dataset/Annotation_individual_cancers/BLCA
qsub -N CNmapBRCA.bed -q LowMemShortterm.q -l h_vmem=16G -o /mnt/lustre/users/k1801782/dataset/CNV/log/log_BRCA.bed.out -e /mnt/lustre/users/k1801782/dataset/CNV/log/log_BRCA.bed.err /mnt/lustre/users/k1801782/dataset/SKCM_control/annotation_scripts_test2/run.sh -c BRCA -s /mnt/lustre/users/k1801782/dataset/Annotation_individual_cancers/BRCA
qsub -N CNmapCESC.bed -q LowMemShortterm.q -l h_vmem=16G -o /mnt/lustre/users/k1801782/dataset/CNV/log/log_CESC.bed.out -e /mnt/lustre/users/k1801782/dataset/CNV/log/log_CESC.bed.err /mnt/lustre/users/k1801782/dataset/SKCM_control/annotation_scripts_test2/run.sh -c CESC -s /mnt/lustre/users/k1801782/dataset/Annotation_individual_cancers/CESC
qsub -N CNmapCHOL.bed -q LowMemShortterm.q -l h_vmem=16G -o /mnt/lustre/users/k1801782/dataset/CNV/log/log_CHOL.bed.out -e /mnt/lustre/users/k1801782/dataset/CNV/log/log_CHOL.bed.err /mnt/lustre/users/k1801782/dataset/SKCM_control/annotation_scripts_test2/run.sh -c CHOL -s /mnt/lustre/users/k1801782/dataset/Annotation_individual_cancers/CHOL
qsub -N CNmapCOAD.bed -q LowMemShortterm.q -l h_vmem=16G -o /mnt/lustre/users/k1801782/dataset/CNV/log/log_COAD.bed.out -e /mnt/lustre/users/k1801782/dataset/CNV/log/log_COAD.bed.err /mnt/lustre/users/k1801782/dataset/SKCM_control/annotation_scripts_test2/run.sh -c COAD -s /mnt/lustre/users/k1801782/dataset/Annotation_individual_cancers/COAD
qsub -N CNmapDLBC.bed -q LowMemShortterm.q -l h_vmem=16G -o /mnt/lustre/users/k1801782/dataset/CNV/log/log_DLBC.bed.out -e /mnt/lustre/users/k1801782/dataset/CNV/log/log_DLBC.bed.err /mnt/lustre/users/k1801782/dataset/SKCM_control/annotation_scripts_test2/run.sh -c DLBC -s /mnt/lustre/users/k1801782/dataset/Annotation_individual_cancers/DLBC
qsub -N CNmapESCA.bed -q LowMemShortterm.q -l h_vmem=16G -o /mnt/lustre/users/k1801782/dataset/CNV/log/log_ESCA.bed.out -e /mnt/lustre/users/k1801782/dataset/CNV/log/log_ESCA.bed.err /mnt/lustre/users/k1801782/dataset/SKCM_control/annotation_scripts_test2/run.sh -c ESCA -s /mnt/lustre/users/k1801782/dataset/Annotation_individual_cancers/ESCA
qsub -N CNmapGBM.bed -q LowMemShortterm.q -l h_vmem=16G -o /mnt/lustre/users/k1801782/dataset/CNV/log/log_GBM.bed.out -e /mnt/lustre/users/k1801782/dataset/CNV/log/log_GBM.bed.err /mnt/lustre/users/k1801782/dataset/SKCM_control/annotation_scripts_test2/run.sh -c GBM -s /mnt/lustre/users/k1801782/dataset/Annotation_individual_cancers/GBM
qsub -N CNmapHNSC.bed -q LowMemShortterm.q -l h_vmem=16G -o /mnt/lustre/users/k1801782/dataset/CNV/log/log_HNSC.bed.out -e /mnt/lustre/users/k1801782/dataset/CNV/log/log_HNSC.bed.err /mnt/lustre/users/k1801782/dataset/SKCM_control/annotation_scripts_test2/run.sh -c HNSC -s /mnt/lustre/users/k1801782/dataset/Annotation_individual_cancers/HNSC
qsub -N CNmapKICH.bed -q LowMemShortterm.q -l h_vmem=16G -o /mnt/lustre/users/k1801782/dataset/CNV/log/log_KICH.bed.out -e /mnt/lustre/users/k1801782/dataset/CNV/log/log_KICH.bed.err /mnt/lustre/users/k1801782/dataset/SKCM_control/annotation_scripts_test2/run.sh -c KICH -s /mnt/lustre/users/k1801782/dataset/Annotation_individual_cancers/KICH
qsub -N CNmapKIRC.bed -q LowMemShortterm.q -l h_vmem=16G -o /mnt/lustre/users/k1801782/dataset/CNV/log/log_KIRC.bed.out -e /mnt/lustre/users/k1801782/dataset/CNV/log/log_KIRC.bed.err /mnt/lustre/users/k1801782/dataset/SKCM_control/annotation_scripts_test2/run.sh -c KIRC -s /mnt/lustre/users/k1801782/dataset/Annotation_individual_cancers/KIRC
qsub -N CNmapKIRP.bed -q LowMemShortterm.q -l h_vmem=16G -o /mnt/lustre/users/k1801782/dataset/CNV/log/log_KIRP.bed.out -e /mnt/lustre/users/k1801782/dataset/CNV/log/log_KIRP.bed.err /mnt/lustre/users/k1801782/dataset/SKCM_control/annotation_scripts_test2/run.sh -c KIRP -s /mnt/lustre/users/k1801782/dataset/Annotation_individual_cancers/KIRP
qsub -N CNmapLAML.bed -q LowMemShortterm.q -l h_vmem=16G -o /mnt/lustre/users/k1801782/dataset/CNV/log/log_LAML.bed.out -e /mnt/lustre/users/k1801782/dataset/CNV/log/log_LAML.bed.err /mnt/lustre/users/k1801782/dataset/SKCM_control/annotation_scripts_test2/run.sh -c LAML -s /mnt/lustre/users/k1801782/dataset/Annotation_individual_cancers/LAML
qsub -N CNmapLGG.bed -q LowMemShortterm.q -l h_vmem=16G -o /mnt/lustre/users/k1801782/dataset/CNV/log/log_LGG.bed.out -e /mnt/lustre/users/k1801782/dataset/CNV/log/log_LGG.bed.err /mnt/lustre/users/k1801782/dataset/SKCM_control/annotation_scripts_test2/run.sh -c LGG -s /mnt/lustre/users/k1801782/dataset/Annotation_individual_cancers/LGG
qsub -N CNmapLIHC.bed -q LowMemShortterm.q -l h_vmem=16G -o /mnt/lustre/users/k1801782/dataset/CNV/log/log_LIHC.bed.out -e /mnt/lustre/users/k1801782/dataset/CNV/log/log_LIHC.bed.err /mnt/lustre/users/k1801782/dataset/SKCM_control/annotation_scripts_test2/run.sh -c LIHC -s /mnt/lustre/users/k1801782/dataset/Annotation_individual_cancers/LIHC
qsub -N CNmapLUAD.bed -q LowMemShortterm.q -l h_vmem=16G -o /mnt/lustre/users/k1801782/dataset/CNV/log/log_LUAD.bed.out -e /mnt/lustre/users/k1801782/dataset/CNV/log/log_LUAD.bed.err /mnt/lustre/users/k1801782/dataset/SKCM_control/annotation_scripts_test2/run.sh -c LUAD -s /mnt/lustre/users/k1801782/dataset/Annotation_individual_cancers/LUAD
qsub -N CNmapLUSC.bed -q LowMemShortterm.q -l h_vmem=16G -o /mnt/lustre/users/k1801782/dataset/CNV/log/log_LUSC.bed.out -e /mnt/lustre/users/k1801782/dataset/CNV/log/log_LUSC.bed.err /mnt/lustre/users/k1801782/dataset/SKCM_control/annotation_scripts_test2/run.sh -c LUSC -s /mnt/lustre/users/k1801782/dataset/Annotation_individual_cancers/LUSC
qsub -N CNmapMESO.bed -q LowMemShortterm.q -l h_vmem=16G -o /mnt/lustre/users/k1801782/dataset/CNV/log/log_MESO.bed.out -e /mnt/lustre/users/k1801782/dataset/CNV/log/log_MESO.bed.err /mnt/lustre/users/k1801782/dataset/SKCM_control/annotation_scripts_test2/run.sh -c MESO -s /mnt/lustre/users/k1801782/dataset/Annotation_individual_cancers/MESO
qsub -N CNmapOV.bed -q LowMemShortterm.q -l h_vmem=16G -o /mnt/lustre/users/k1801782/dataset/CNV/log/log_OV.bed.out -e /mnt/lustre/users/k1801782/dataset/CNV/log/log_OV.bed.err /mnt/lustre/users/k1801782/dataset/SKCM_control/annotation_scripts_test2/run.sh -c OV -s /mnt/lustre/users/k1801782/dataset/Annotation_individual_cancers/OV
qsub -N CNmapPAAD.bed -q LowMemShortterm.q -l h_vmem=16G -o /mnt/lustre/users/k1801782/dataset/CNV/log/log_PAAD.bed.out -e /mnt/lustre/users/k1801782/dataset/CNV/log/log_PAAD.bed.err /mnt/lustre/users/k1801782/dataset/SKCM_control/annotation_scripts_test2/run.sh -c PAAD -s /mnt/lustre/users/k1801782/dataset/Annotation_individual_cancers/PAAD
qsub -N CNmapPCPG.bed -q LowMemShortterm.q -l h_vmem=16G -o /mnt/lustre/users/k1801782/dataset/CNV/log/log_PCPG.bed.out -e /mnt/lustre/users/k1801782/dataset/CNV/log/log_PCPG.bed.err /mnt/lustre/users/k1801782/dataset/SKCM_control/annotation_scripts_test2/run.sh -c PCPG -s /mnt/lustre/users/k1801782/dataset/Annotation_individual_cancers/PCPG
qsub -N CNmapPRAD.bed -q LowMemShortterm.q -l h_vmem=16G -o /mnt/lustre/users/k1801782/dataset/CNV/log/log_PRAD.bed.out -e /mnt/lustre/users/k1801782/dataset/CNV/log/log_PRAD.bed.err /mnt/lustre/users/k1801782/dataset/SKCM_control/annotation_scripts_test2/run.sh -c PRAD -s /mnt/lustre/users/k1801782/dataset/Annotation_individual_cancers/PRAD
qsub -N CNmapREAD.bed -q LowMemShortterm.q -l h_vmem=16G -o /mnt/lustre/users/k1801782/dataset/CNV/log/log_READ.bed.out -e /mnt/lustre/users/k1801782/dataset/CNV/log/log_READ.bed.err /mnt/lustre/users/k1801782/dataset/SKCM_control/annotation_scripts_test2/run.sh -c READ -s /mnt/lustre/users/k1801782/dataset/Annotation_individual_cancers/READ
qsub -N CNmapSARC.bed -q LowMemShortterm.q -l h_vmem=16G -o /mnt/lustre/users/k1801782/dataset/CNV/log/log_SARC.bed.out -e /mnt/lustre/users/k1801782/dataset/CNV/log/log_SARC.bed.err /mnt/lustre/users/k1801782/dataset/SKCM_control/annotation_scripts_test2/run.sh -c SARC -s /mnt/lustre/users/k1801782/dataset/Annotation_individual_cancers/SARC
qsub -N CNmapSKCM.bed -q LowMemShortterm.q -l h_vmem=16G -o /mnt/lustre/users/k1801782/dataset/CNV/log/log_SKCM.bed.out -e /mnt/lustre/users/k1801782/dataset/CNV/log/log_SKCM.bed.err /mnt/lustre/users/k1801782/dataset/SKCM_control/annotation_scripts_test2/run.sh -c SKCM -s /mnt/lustre/users/k1801782/dataset/Annotation_individual_cancers/SKCM
qsub -N CNmapSTAD.bed -q LowMemShortterm.q -l h_vmem=16G -o /mnt/lustre/users/k1801782/dataset/CNV/log/log_STAD.bed.out -e /mnt/lustre/users/k1801782/dataset/CNV/log/log_STAD.bed.err /mnt/lustre/users/k1801782/dataset/SKCM_control/annotation_scripts_test2/run.sh -c STAD -s /mnt/lustre/users/k1801782/dataset/Annotation_individual_cancers/STAD
qsub -N CNmapTGCT.bed -q LowMemShortterm.q -l h_vmem=16G -o /mnt/lustre/users/k1801782/dataset/CNV/log/log_TGCT.bed.out -e /mnt/lustre/users/k1801782/dataset/CNV/log/log_TGCT.bed.err /mnt/lustre/users/k1801782/dataset/SKCM_control/annotation_scripts_test2/run.sh -c TGCT -s /mnt/lustre/users/k1801782/dataset/Annotation_individual_cancers/TGCT
qsub -N CNmapTHCA.bed -q LowMemShortterm.q -l h_vmem=16G -o /mnt/lustre/users/k1801782/dataset/CNV/log/log_THCA.bed.out -e /mnt/lustre/users/k1801782/dataset/CNV/log/log_THCA.bed.err /mnt/lustre/users/k1801782/dataset/SKCM_control/annotation_scripts_test2/run.sh -c THCA -s /mnt/lustre/users/k1801782/dataset/Annotation_individual_cancers/THCA
qsub -N CNmapTHYM.bed -q LowMemShortterm.q -l h_vmem=16G -o /mnt/lustre/users/k1801782/dataset/CNV/log/log_THYM.bed.out -e /mnt/lustre/users/k1801782/dataset/CNV/log/log_THYM.bed.err /mnt/lustre/users/k1801782/dataset/SKCM_control/annotation_scripts_test2/run.sh -c THYM -s /mnt/lustre/users/k1801782/dataset/Annotation_individual_cancers/THYM
qsub -N CNmapUCEC.bed -q LowMemShortterm.q -l h_vmem=16G -o /mnt/lustre/users/k1801782/dataset/CNV/log/log_UCEC.bed.out -e /mnt/lustre/users/k1801782/dataset/CNV/log/log_UCEC.bed.err /mnt/lustre/users/k1801782/dataset/SKCM_control/annotation_scripts_test2/run.sh -c UCEC -s /mnt/lustre/users/k1801782/dataset/Annotation_individual_cancers/UCEC
qsub -N CNmapUCS.bed -q LowMemShortterm.q -l h_vmem=16G -o /mnt/lustre/users/k1801782/dataset/CNV/log/log_UCS.bed.out -e /mnt/lustre/users/k1801782/dataset/CNV/log/log_UCS.bed.err /mnt/lustre/users/k1801782/dataset/SKCM_control/annotation_scripts_test2/run.sh -c UCS -s /mnt/lustre/users/k1801782/dataset/Annotation_individual_cancers/UCS
qsub -N CNmapUVM.bed -q LowMemShortterm.q -l h_vmem=16G -o /mnt/lustre/users/k1801782/dataset/CNV/log/log_UVM.bed.out -e /mnt/lustre/users/k1801782/dataset/CNV/log/log_UVM.bed.err /mnt/lustre/users/k1801782/dataset/SKCM_control/annotation_scripts_test2/run.sh -c UVM -s /mnt/lustre/users/k1801782/dataset/Annotation_individual_cancers/UVM
qsub -N CNmapOAC.bed -q LowMemShortterm.q -l h_vmem=16G -o /mnt/lustre/users/k1801782/dataset/CNV/log/log_OAC.bed.out -e /mnt/lustre/users/k1801782/dataset/CNV/log/log_OAC.bed.err /mnt/lustre/users/k1801782/dataset/SKCM_control/annotation_scripts_test2/run.sh -c OAC -s /mnt/lustre/users/k1801782/dataset/Annotation_individual_cancers/OAC
qsub -N CNmapOSCC.bed -q LowMemShortterm.q -l h_vmem=16G -o /mnt/lustre/users/k1801782/dataset/CNV/log/log_OSCC.bed.out -e /mnt/lustre/users/k1801782/dataset/CNV/log/log_OSCC.bed.err /mnt/lustre/users/k1801782/dataset/SKCM_control/annotation_scripts_test2/run.sh -c OSCC -s /mnt/lustre/users/k1801782/dataset/Annotation_individual_cancers/OSCC