Fix docstring-constructor mismatches, wrong variable references, and kinetic_energy double-counting by Copilot · Pull Request #1100 · trixi-framework/TrixiParticles.jl

Copilot · 2026-03-16T17:07:21Z

Systematic review of the codebase for inconsistencies and errors that can be fixed with small, surgical changes.

Logic bugs

show methods reference undefined variable system — Polygon, TriangleMesh, and WindingNumberJacobson compact show methods use show(io, system) instead of the actual parameter name (geometry/winding). Crashes with UndefVarError at runtime.

kinetic_energy double-counts for structure systems — energy += inside a sum() do block returns cumulative sums instead of individual values. For n equal-energy particles, computes n(n+1)/2 · e instead of n · e:

# Before (wrong): sum accumulates cumulative values
return sum(each_active_particle(system)) do particle
    energy += mass[particle] * dot(v_i, v_i) / 2
end

# After: each iteration returns its own contribution
return sum(each_active_particle(system)) do particle
    mass[particle] * dot(v_i, v_i) / 2
end

BoundsError reports wrong index in move_particles_to_end! — findfirst returns the index into particle_ids_to_move, but the error reports it as if it were the out-of-bounds particle ID. Fixed to use particle_ids_to_move[invalid_id].

Docstring-constructor mismatches

BlendedGradientCorrection: missing required blending_factor arg
EntropicallyDampedSPHSystem: missing average_pressure_reduction, correction params; wrong param order
DensityReinitializationCallback: missing particle_system positional arg; reinit_initial_solution default false → true
BernoulliPressureExtrapolation: missing allow_loop_flipping=true
ComplexShape: hierarchical_winding default false → true
extrude_geometry: missing place_on_shell=false
4 surface tension types: missing ; separator for keyword args
PostprocessCallback: append_timestep → append_timestamp

Docstring syntax/formatting

Extra ) in SimpleMirroring and WeaklyCompressibleSPHSystem signatures
Trailing , . in interpolate_point see-also section
todo → TODO in DEM system for consistency

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<issue_title>Review inconsistencies and errors</issue_title>
<issue_description>There are some inconsistencies and errors in the code. For example docstrings don't match the constructors, or code that is fragile and might break in the future. Also simple errors like typos. It would be useful to let AI agents give a run at this.</issue_description>

<agent_instructions>Check the whole codebase for inconsistencies and errors and fix those that can be fixed with small changes. Don't address issues that require significant code changes. Create GitHub issues for those.</agent_instructions>

Comments on the Issue (you are @copilot in this section)

Fixes Review inconsistencies and errors #1099

📱 Kick off Copilot coding agent tasks wherever you are with GitHub Mobile, available on iOS and Android.

- Fix typo `append_timestep` → `append_timestamp` in PostprocessCallback docstring - Add missing `blending_factor` param in BlendedGradientCorrection docstring signature - Add missing `;` in 4 surface tension docstring signatures - Add missing `allow_loop_flipping=true` to BernoulliPressureExtrapolation docstring - Remove extra closing parenthesis in SimpleMirroring docstring - Remove trailing `, .` in interpolate_point docstring - Remove extra closing parenthesis in WeaklyCompressibleSPHSystem docstring - Fix wrong default `hierarchical_winding=false` → `true` in ComplexShape docstring - Add missing `particle_system` arg and fix `reinit_initial_solution` default in DensityReinitializationCallback docstring - Add missing `average_pressure_reduction` and `correction` to EntropicallyDampedSPHSystem docstring signature - Fix inconsistent `todo` → `TODO` capitalization in DEM system - Add missing `place_on_shell=false` to extrude_geometry docstring signature Co-authored-by: efaulhaber <44124897+efaulhaber@users.noreply.github.com>

…gy double-counting, BoundsError wrong index - Fix show(io, system) → show(io, geometry) in Polygon and TriangleMesh show methods - Fix show(io, system) → show(io, winding) in WindingNumberJacobson show method - Fix kinetic_energy for AbstractStructureSystem: remove energy += accumulator that caused double-counting via sum() - Fix BoundsError in move_particles_to_end! to report actual invalid particle ID instead of array index Co-authored-by: efaulhaber <44124897+efaulhaber@users.noreply.github.com>

Initial plan

1246ed7

Copilot AI assigned Copilot and efaulhaber Mar 16, 2026

Copilot started work on behalf of efaulhaber March 16, 2026 17:07 View session

Copilot AI changed the title ~~[WIP] Review and fix inconsistencies and errors in code~~ Fix docstring inconsistencies and errors across the codebase Mar 16, 2026

Copilot AI requested a review from efaulhaber March 16, 2026 17:41

Copilot finished work on behalf of efaulhaber March 16, 2026 17:41

Copilot started work on behalf of efaulhaber March 16, 2026 17:43 View session

Copilot AI changed the title ~~Fix docstring inconsistencies and errors across the codebase~~ Fix docstring-constructor mismatches, wrong variable references, and kinetic_energy double-counting Mar 16, 2026

Copilot finished work on behalf of efaulhaber March 16, 2026 18:34

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Fix docstring-constructor mismatches, wrong variable references, and kinetic_energy double-counting#1100

Fix docstring-constructor mismatches, wrong variable references, and kinetic_energy double-counting#1100
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copilot/review-inconsistencies-and-errors

Copilot AI commented Mar 16, 2026 •

edited

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Copilot AI commented Mar 16, 2026 • edited Loading Uh oh! There was an error while loading. Please reload this page.

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Logic bugs

Docstring-constructor mismatches

Docstring syntax/formatting

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Copilot AI commented Mar 16, 2026 •

edited

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