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Merge remote-tracking branch 'origin/2023.06-software.eessi.io' into maqao
2 parents bad3a58 + 187ae2f commit 65832ce

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‎.github/workflows/test-software.eessi.io.yml‎

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EESSI_SOFTWARE_SUBDIR_OVERRIDE: x86_64/intel/sapphirerapids
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- runs_on: ubuntu-24.04
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EESSI_SOFTWARE_SUBDIR_OVERRIDE: x86_64/intel/skylake_avx512
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- runs_on: ubuntu-24.04
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EESSI_SOFTWARE_SUBDIR_OVERRIDE: x86_64/intel/icelake
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- runs_on: ubuntu-24.04
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EESSI_SOFTWARE_SUBDIR_OVERRIDE: x86_64/intel/cascadelake
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- runs_on: ubuntu-24.04
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EESSI_SOFTWARE_SUBDIR_OVERRIDE: x86_64/generic
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runs-on: ${{ matrix.runs_on }}

‎.github/workflows/test_compare_stacks.yml‎

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- x86_64/intel/haswell
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- x86_64/intel/skylake_avx512
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- x86_64/intel/sapphirerapids
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- x86_64/intel/icelake
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- x86_64/intel/cascadelake
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steps:
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- name: Check out software-layer repository
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uses: actions/checkout@b4ffde65f46336ab88eb53be808477a3936bae11 # v4.1.1

‎easystacks/software.eessi.io/2023.06/a64fx/eessi-2023.06-eb-5.0.0-2023a.yml‎

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easyconfigs:
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- Siesta-5.2.2-foss-2023a.eb:
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options:
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# see https://github.com/easybuilders/easybuild-easyconfigs/pull/22799
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from-commit: 0f843163c223d8c5397d1945123913108ed2e0f5
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# Siesta testsuite fails in Deucalion's a64fx EESSI build environment
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# but skipping the tests during build and then running them with the
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# installed module works, so skipping the tests only in this case
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skip-test-step: True

‎easystacks/software.eessi.io/2023.06/accel/nvidia/eessi-2023.06-eb-4.9.4-cc70-CUDA.yml‎

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# 2025.04.15
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# Rebuild CUDA and OSU-Micro-Benchmarks-CUDA software for cc70
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easyconfigs:
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- CUDA-12.1.1.eb:
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options:
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accept-eula-for: CUDA
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# see https://github.com/easybuilders/easybuild-easyblocks/pull/3516
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include-easyblocks-from-commit: 3469151ce7e4f85415c877dee555aeea7691c757
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- CUDA-Samples-12.1-GCC-12.3.0-CUDA-12.1.1.eb
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- UCX-CUDA-1.14.1-GCCcore-12.3.0-CUDA-12.1.1.eb
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- UCC-CUDA-1.2.0-GCCcore-12.3.0-CUDA-12.1.1.eb
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- OSU-Micro-Benchmarks-7.2-gompi-2023a-CUDA-12.1.1.eb
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- CUDA-12.4.0.eb:
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options:
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accept-eula-for: CUDA
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include-easyblocks-from-commit: 3469151ce7e4f85415c877dee555aeea7691c757
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- UCX-CUDA-1.15.0-GCCcore-13.2.0-CUDA-12.4.0.eb
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- UCC-CUDA-1.2.0-GCCcore-13.2.0-CUDA-12.4.0.eb:
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options:
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# see https://github.com/easybuilders/easybuild-easyconfigs/pull/21565
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from-commit: 46141a3f40e699433fac03af2d3ed81bd5a62da7
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- OSU-Micro-Benchmarks-7.5-gompi-2023b-CUDA-12.4.0.eb:
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options:
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# see https://github.com/easybuilders/easybuild-easyconfigs/pull/21926
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# from-commit: de79ec74eb076e1aceda5e21235a73c05ed6764c
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# use merge commit
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from-commit: f3bd10b19f7caf4de3302bc7a73749341db9c7d8

‎easystacks/software.eessi.io/2023.06/accel/nvidia/eessi-2023.06-eb-4.9.4-cc80-CUDA.yml‎

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# 2025.05.06
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# Build CUDA and OSU-Micro-Benchmarks-CUDA software for cc80
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easyconfigs:
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- CUDA-12.1.1.eb:
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options:
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accept-eula-for: CUDA
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# see https://github.com/easybuilders/easybuild-easyblocks/pull/3516
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include-easyblocks-from-commit: 3469151ce7e4f85415c877dee555aeea7691c757
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- CUDA-Samples-12.1-GCC-12.3.0-CUDA-12.1.1.eb
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- UCX-CUDA-1.14.1-GCCcore-12.3.0-CUDA-12.1.1.eb
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- UCC-CUDA-1.2.0-GCCcore-12.3.0-CUDA-12.1.1.eb
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- OSU-Micro-Benchmarks-7.2-gompi-2023a-CUDA-12.1.1.eb
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- CUDA-12.4.0.eb:
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options:
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accept-eula-for: CUDA
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include-easyblocks-from-commit: 3469151ce7e4f85415c877dee555aeea7691c757
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- UCX-CUDA-1.15.0-GCCcore-13.2.0-CUDA-12.4.0.eb
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- UCC-CUDA-1.2.0-GCCcore-13.2.0-CUDA-12.4.0.eb:
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options:
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# see https://github.com/easybuilders/easybuild-easyconfigs/pull/21565
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from-commit: 46141a3f40e699433fac03af2d3ed81bd5a62da7
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- OSU-Micro-Benchmarks-7.5-gompi-2023b-CUDA-12.4.0.eb:
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options:
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# see https://github.com/easybuilders/easybuild-easyconfigs/pull/21926
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# from-commit: de79ec74eb076e1aceda5e21235a73c05ed6764c
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# use merge commit
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from-commit: f3bd10b19f7caf4de3302bc7a73749341db9c7d8

‎easystacks/software.eessi.io/2023.06/accel/nvidia/eessi-2023.06-eb-4.9.4-cc90-CUDA.yml‎

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# 2025.05.06
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# Build CUDA and OSU-Micro-Benchmarks-CUDA software for cc90
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easyconfigs:
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- CUDA-12.1.1.eb:
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options:
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accept-eula-for: CUDA
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# see https://github.com/easybuilders/easybuild-easyblocks/pull/3516
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include-easyblocks-from-commit: 3469151ce7e4f85415c877dee555aeea7691c757
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- CUDA-Samples-12.1-GCC-12.3.0-CUDA-12.1.1.eb
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- UCX-CUDA-1.14.1-GCCcore-12.3.0-CUDA-12.1.1.eb
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- UCC-CUDA-1.2.0-GCCcore-12.3.0-CUDA-12.1.1.eb
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- OSU-Micro-Benchmarks-7.2-gompi-2023a-CUDA-12.1.1.eb
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- CUDA-12.4.0.eb:
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options:
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accept-eula-for: CUDA
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include-easyblocks-from-commit: 3469151ce7e4f85415c877dee555aeea7691c757
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- UCX-CUDA-1.15.0-GCCcore-13.2.0-CUDA-12.4.0.eb
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- UCC-CUDA-1.2.0-GCCcore-13.2.0-CUDA-12.4.0.eb:
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options:
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# see https://github.com/easybuilders/easybuild-easyconfigs/pull/21565
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from-commit: 46141a3f40e699433fac03af2d3ed81bd5a62da7
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- OSU-Micro-Benchmarks-7.5-gompi-2023b-CUDA-12.4.0.eb:
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options:
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# see https://github.com/easybuilders/easybuild-easyconfigs/pull/21926
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# from-commit: de79ec74eb076e1aceda5e21235a73c05ed6764c
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# use merge commit
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from-commit: f3bd10b19f7caf4de3302bc7a73749341db9c7d8

‎easystacks/software.eessi.io/2023.06/icelake_cclake/060-eb-4.9.3.yml‎

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# 060-eb-4.9.3.yml: total build duration = 42 minutes
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easyconfigs:
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- /cvmfs/software.eessi.io/versions/2023.06/software/linux/x86_64/intel/haswell/software/GROMACS/2024.3-foss-2023b/easybuild/GROMACS-2024.3-foss-2023b.eb:
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options:
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include-easyblocks: /cvmfs/software.eessi.io/versions/2023.06/software/linux/x86_64/intel/haswell/software/GROMACS/2024.3-foss-2023b/easybuild/reprod/easyblocks/*.py

‎easystacks/software.eessi.io/2023.06/icelake_cclake/061-eb-4.9.2.yml‎

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# 061-eb-4.9.2.yml: total build duration = 23 minutes
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easyconfigs:
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- /cvmfs/software.eessi.io/versions/2023.06/software/linux/x86_64/intel/haswell/software/ncbi-vdb/3.0.5-gompi-2022b/easybuild/ncbi-vdb-3.0.5-gompi-2022b.eb:
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options:
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include-easyblocks: /cvmfs/software.eessi.io/versions/2023.06/software/linux/x86_64/intel/haswell/software/ncbi-vdb/3.0.5-gompi-2022b/easybuild/reprod/easyblocks/*.py
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- /cvmfs/software.eessi.io/versions/2023.06/software/linux/x86_64/intel/haswell/software/HTSlib/1.17-GCC-12.2.0/easybuild/HTSlib-1.17-GCC-12.2.0.eb:
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options:
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include-easyblocks: /cvmfs/software.eessi.io/versions/2023.06/software/linux/x86_64/intel/haswell/software/HTSlib/1.17-GCC-12.2.0/easybuild/reprod/easyblocks/*.py
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- /cvmfs/software.eessi.io/versions/2023.06/software/linux/x86_64/intel/haswell/software/Bio-DB-HTS/3.01-GCC-12.2.0/easybuild/Bio-DB-HTS-3.01-GCC-12.2.0.eb:
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options:
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include-easyblocks: /cvmfs/software.eessi.io/versions/2023.06/software/linux/x86_64/intel/haswell/software/Bio-DB-HTS/3.01-GCC-12.2.0/easybuild/reprod/easyblocks/*.py
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- /cvmfs/software.eessi.io/versions/2023.06/software/linux/x86_64/intel/haswell/software/MAFFT/7.505-GCC-12.2.0-with-extensions/easybuild/MAFFT-7.505-GCC-12.2.0-with-extensions.eb:
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options:
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include-easyblocks: /cvmfs/software.eessi.io/versions/2023.06/software/linux/x86_64/intel/haswell/software/MAFFT/7.505-GCC-12.2.0-with-extensions/easybuild/reprod/easyblocks/*.py
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- /cvmfs/software.eessi.io/versions/2023.06/software/linux/x86_64/intel/haswell/software/MetaEuk/6-GCC-12.2.0/easybuild/MetaEuk-6-GCC-12.2.0.eb:
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options:
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include-easyblocks: /cvmfs/software.eessi.io/versions/2023.06/software/linux/x86_64/intel/haswell/software/MetaEuk/6-GCC-12.2.0/easybuild/reprod/easyblocks/*.py
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- /cvmfs/software.eessi.io/versions/2023.06/software/linux/x86_64/intel/haswell/software/BamTools/2.5.2-GCC-12.2.0/easybuild/BamTools-2.5.2-GCC-12.2.0.eb:
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options:
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include-easyblocks: /cvmfs/software.eessi.io/versions/2023.06/software/linux/x86_64/intel/haswell/software/BamTools/2.5.2-GCC-12.2.0/easybuild/reprod/easyblocks/*.py
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- /cvmfs/software.eessi.io/versions/2023.06/software/linux/x86_64/intel/haswell/software/Bio-SearchIO-hmmer/1.7.3-GCC-12.2.0/easybuild/Bio-SearchIO-hmmer-1.7.3-GCC-12.2.0.eb:
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options:
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include-easyblocks: /cvmfs/software.eessi.io/versions/2023.06/software/linux/x86_64/intel/haswell/software/Bio-SearchIO-hmmer/1.7.3-GCC-12.2.0/easybuild/reprod/easyblocks/*.py
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- /cvmfs/software.eessi.io/versions/2023.06/software/linux/x86_64/intel/haswell/software/CapnProto/0.10.3-GCCcore-12.2.0/easybuild/CapnProto-0.10.3-GCCcore-12.2.0.eb:
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options:
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include-easyblocks: /cvmfs/software.eessi.io/versions/2023.06/software/linux/x86_64/intel/haswell/software/CapnProto/0.10.3-GCCcore-12.2.0/easybuild/reprod/easyblocks/*.py
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- /cvmfs/software.eessi.io/versions/2023.06/software/linux/x86_64/intel/haswell/software/Mash/2.3-GCC-12.2.0/easybuild/Mash-2.3-GCC-12.2.0.eb:
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options:
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include-easyblocks: /cvmfs/software.eessi.io/versions/2023.06/software/linux/x86_64/intel/haswell/software/Mash/2.3-GCC-12.2.0/easybuild/reprod/easyblocks/*.py
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- /cvmfs/software.eessi.io/versions/2023.06/software/linux/x86_64/intel/haswell/software/Pysam/0.21.0-GCC-12.2.0/easybuild/Pysam-0.21.0-GCC-12.2.0.eb:
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options:
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include-easyblocks: /cvmfs/software.eessi.io/versions/2023.06/software/linux/x86_64/intel/haswell/software/Pysam/0.21.0-GCC-12.2.0/easybuild/reprod/easyblocks/*.py
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- /cvmfs/software.eessi.io/versions/2023.06/software/linux/x86_64/intel/haswell/software/pyfaidx/0.7.2.1-GCCcore-12.2.0/easybuild/pyfaidx-0.7.2.1-GCCcore-12.2.0.eb:
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options:
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include-easyblocks: /cvmfs/software.eessi.io/versions/2023.06/software/linux/x86_64/intel/haswell/software/pyfaidx/0.7.2.1-GCCcore-12.2.0/easybuild/reprod/easyblocks/*.py
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- /cvmfs/software.eessi.io/versions/2023.06/software/linux/x86_64/intel/haswell/software/ISA-L/2.30.0-GCCcore-12.2.0/easybuild/ISA-L-2.30.0-GCCcore-12.2.0.eb:
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options:
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include-easyblocks: /cvmfs/software.eessi.io/versions/2023.06/software/linux/x86_64/intel/haswell/software/ISA-L/2.30.0-GCCcore-12.2.0/easybuild/reprod/easyblocks/*.py
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- /cvmfs/software.eessi.io/versions/2023.06/software/linux/x86_64/intel/haswell/software/python-isal/1.1.0-GCCcore-12.2.0/easybuild/python-isal-1.1.0-GCCcore-12.2.0.eb:
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options:
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include-easyblocks: /cvmfs/software.eessi.io/versions/2023.06/software/linux/x86_64/intel/haswell/software/python-isal/1.1.0-GCCcore-12.2.0/easybuild/reprod/easyblocks/*.py
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- /cvmfs/software.eessi.io/versions/2023.06/software/linux/x86_64/intel/haswell/software/WhatsHap/2.1-foss-2022b/easybuild/WhatsHap-2.1-foss-2022b.eb:
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options:
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include-easyblocks: /cvmfs/software.eessi.io/versions/2023.06/software/linux/x86_64/intel/haswell/software/WhatsHap/2.1-foss-2022b/easybuild/reprod/easyblocks/*.py
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- /cvmfs/software.eessi.io/versions/2023.06/software/linux/x86_64/intel/haswell/software/SAMtools/1.17-GCC-12.2.0/easybuild/SAMtools-1.17-GCC-12.2.0.eb:
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options:
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include-easyblocks: /cvmfs/software.eessi.io/versions/2023.06/software/linux/x86_64/intel/haswell/software/SAMtools/1.17-GCC-12.2.0/easybuild/reprod/easyblocks/*.py
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- /cvmfs/software.eessi.io/versions/2023.06/software/linux/x86_64/intel/haswell/software/Bowtie2/2.5.1-GCC-12.2.0/easybuild/Bowtie2-2.5.1-GCC-12.2.0.eb:
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options:
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include-easyblocks: /cvmfs/software.eessi.io/versions/2023.06/software/linux/x86_64/intel/haswell/software/Bowtie2/2.5.1-GCC-12.2.0/easybuild/reprod/easyblocks/*.py
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- /cvmfs/software.eessi.io/versions/2023.06/software/linux/x86_64/intel/haswell/software/CD-HIT/4.8.1-GCC-12.2.0/easybuild/CD-HIT-4.8.1-GCC-12.2.0.eb:
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options:
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include-easyblocks: /cvmfs/software.eessi.io/versions/2023.06/software/linux/x86_64/intel/haswell/software/CD-HIT/4.8.1-GCC-12.2.0/easybuild/reprod/easyblocks/*.py
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- /cvmfs/software.eessi.io/versions/2023.06/software/linux/x86_64/intel/haswell/software/VCFtools/0.1.16-GCC-12.2.0/easybuild/VCFtools-0.1.16-GCC-12.2.0.eb:
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options:
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include-easyblocks: /cvmfs/software.eessi.io/versions/2023.06/software/linux/x86_64/intel/haswell/software/VCFtools/0.1.16-GCC-12.2.0/easybuild/reprod/easyblocks/*.py
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- /cvmfs/software.eessi.io/versions/2023.06/software/linux/x86_64/intel/haswell/software/GenomeTools/1.6.2-GCC-12.2.0/easybuild/GenomeTools-1.6.2-GCC-12.2.0.eb:
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include-easyblocks: /cvmfs/software.eessi.io/versions/2023.06/software/linux/x86_64/intel/haswell/software/GenomeTools/1.6.2-GCC-12.2.0/easybuild/reprod/easyblocks/*.py
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- /cvmfs/software.eessi.io/versions/2023.06/software/linux/x86_64/intel/haswell/software/parallel/20230722-GCCcore-12.2.0/easybuild/parallel-20230722-GCCcore-12.2.0.eb:
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include-easyblocks: /cvmfs/software.eessi.io/versions/2023.06/software/linux/x86_64/intel/haswell/software/parallel/20230722-GCCcore-12.2.0/easybuild/reprod/easyblocks/*.py
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- /cvmfs/software.eessi.io/versions/2023.06/software/linux/x86_64/intel/haswell/software/BCFtools/1.17-GCC-12.2.0/easybuild/BCFtools-1.17-GCC-12.2.0.eb:
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include-easyblocks: /cvmfs/software.eessi.io/versions/2023.06/software/linux/x86_64/intel/haswell/software/BCFtools/1.17-GCC-12.2.0/easybuild/reprod/easyblocks/*.py
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- /cvmfs/software.eessi.io/versions/2023.06/software/linux/x86_64/intel/haswell/software/lpsolve/5.5.2.11-GCC-12.2.0/easybuild/lpsolve-5.5.2.11-GCC-12.2.0.eb:
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include-easyblocks: /cvmfs/software.eessi.io/versions/2023.06/software/linux/x86_64/intel/haswell/software/lpsolve/5.5.2.11-GCC-12.2.0/easybuild/reprod/easyblocks/*.py
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- /cvmfs/software.eessi.io/versions/2023.06/software/linux/x86_64/intel/haswell/software/fastp/0.23.4-GCC-12.2.0/easybuild/fastp-0.23.4-GCC-12.2.0.eb:
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include-easyblocks: /cvmfs/software.eessi.io/versions/2023.06/software/linux/x86_64/intel/haswell/software/fastp/0.23.4-GCC-12.2.0/easybuild/reprod/easyblocks/*.py
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- /cvmfs/software.eessi.io/versions/2023.06/software/linux/x86_64/intel/haswell/software/KronaTools/2.8.1-GCCcore-12.2.0/easybuild/KronaTools-2.8.1-GCCcore-12.2.0.eb:
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options:
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include-easyblocks: /cvmfs/software.eessi.io/versions/2023.06/software/linux/x86_64/intel/haswell/software/KronaTools/2.8.1-GCCcore-12.2.0/easybuild/reprod/easyblocks/*.py
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- /cvmfs/software.eessi.io/versions/2023.06/software/linux/x86_64/intel/haswell/software/libyaml/0.2.5-GCCcore-12.2.0/easybuild/libyaml-0.2.5-GCCcore-12.2.0.eb:
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include-easyblocks: /cvmfs/software.eessi.io/versions/2023.06/software/linux/x86_64/intel/haswell/software/libyaml/0.2.5-GCCcore-12.2.0/easybuild/reprod/easyblocks/*.py
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- /cvmfs/software.eessi.io/versions/2023.06/software/linux/x86_64/intel/haswell/software/PyYAML/6.0-GCCcore-12.2.0/easybuild/PyYAML-6.0-GCCcore-12.2.0.eb:
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include-easyblocks: /cvmfs/software.eessi.io/versions/2023.06/software/linux/x86_64/intel/haswell/software/PyYAML/6.0-GCCcore-12.2.0/easybuild/reprod/easyblocks/*.py
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- /cvmfs/software.eessi.io/versions/2023.06/software/linux/x86_64/intel/haswell/software/MultiQC/1.14-foss-2022b/easybuild/MultiQC-1.14-foss-2022b.eb:
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include-easyblocks: /cvmfs/software.eessi.io/versions/2023.06/software/linux/x86_64/intel/haswell/software/MultiQC/1.14-foss-2022b/easybuild/reprod/easyblocks/*.py
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- /cvmfs/software.eessi.io/versions/2023.06/software/linux/x86_64/intel/haswell/software/CGAL/5.5.2-GCCcore-12.2.0/easybuild/CGAL-5.5.2-GCCcore-12.2.0.eb:
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options:
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