{2023.06}[2023a] cutadapt 4.9 (testing staging bundles) by trz42 · Pull Request #91 · trz42/software-layer

trz42 · 2025-04-23T18:41:38Z

Build something small (?) for several architectures and verify if bundling of tarballs into single staging PR works as intended.

…23a.yml

update commits

…ill be used by the bootstrap of load_easybuild_version anyway

…equire a suffix

use latest commit of merged prs for MUSCLE and bcgTree

{2023.06}[SYSTEM,icelake+cascadelake] EasyBuild 4.8.2 + 4.9.0 + 4.9.1 + 4.9.4 + 5.0.0, EESSI-extend

… first

eessi-bot-devel-trz42 · 2025-04-23T18:41:43Z

Instance eX3-dev-310 is configured to build for:

architectures: x86_64/amd/zen2, aarch64/generic
repositories: eessi.io-2023.06-software

…-layer into test_staging_bundles

trz42 · 2025-04-23T18:46:17Z

bot: build instance:eX3-dev-310 repo:eessi.io-2023.06-software arch:x86_64/amd/zen2

eessi-bot-devel-trz42 · 2025-04-23T18:46:21Z

Updates by the bot instance eX3-dev-310 (click for details)

received bot command build instance:eX3-dev-310 repo:eessi.io-2023.06-software arch:x86_64/amd/zen2 from trz42
- expanded format: build instance:eX3-dev-310 repository:eessi.io-2023.06-software architecture:x86_64/amd/zen2
handling command build instance:eX3-dev-310 repository:eessi.io-2023.06-software architecture:x86_64/amd/zen2 resulted in:
- submitted job 797773, for details & status see {2023.06}[2023a] cutadapt 4.9 (testing staging bundles) #91 (comment)

eessi-bot-devel-trz42 · 2025-04-23T18:46:28Z

New job on instance eX3-dev-310 for CPU micro-architecture x86_64-amd-zen2 for repository eessi.io-2023.06-software in job dir /home/thomarob/D1/dev/jobs/2025.04/pr_91/797773

date	job status	comment
Apr 23 06:46:26 PM UTC 2025	submitted	job id `797773` awaits release by job manager
Apr 23 06:47:26 PM UTC 2025	released	job awaits launch by Slurm scheduler
Apr 23 06:48:27 PM UTC 2025	finished	😢 FAILURE (click triangle for details) Details ✅ job output file `slurm-797773.out` ✅ no message matching `FATAL:` ❌ found message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ❌ no message matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts Details No artefacts were created or found.
Apr 23 06:48:27 PM UTC 2025	test result	😢 FAILURE (click triangle for details) Reason EESSI test suite was not run, test step itself failed to execute. Details ✅ job output file `slurm-797773.out` ❌ found message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`

trz42 · 2025-04-23T19:16:28Z

bot: help

eessi-bot-devel-trz42 · 2025-04-23T19:16:32Z

Updates by the bot instance aws-dev-310 (click for details)

received bot command help from trz42
- expanded format: help
handling command help resulted in:
How to send commands to bot instances
- Commands must be sent with a new comment (edits of existing comments are ignored).
- A comment may contain multiple commands, one per line.
- Every command begins at the start of a line and has the syntax bot: COMMAND [ARGUMENTS]*
- Currently supported COMMANDs are: help, build, show_config, status
For more information, see https://www.eessi.io/docs/bot

trz42 · 2025-04-23T19:16:51Z

bot: show_config

eessi-bot-devel-trz42 · 2025-04-23T19:16:54Z

Updates by the bot instance aws-dev-310 (click for details)

received bot command show_config from trz42
- expanded format: show_config
handling command show_config resulted in:
- added comment {2023.06}[2023a] cutadapt 4.9 (testing staging bundles) #91 (comment) to show configuration

eessi-bot-devel-trz42 · 2025-04-23T19:16:57Z

Instance aws-dev-310 is configured to build for:

architectures: x86_64/generic, x86_64/intel/haswell, x86_64/intel/sapphirerapids, x86_64/intel/skylake_avx512, x86_64/amd/zen2, x86_64/amd/zen3, aarch64/generic, aarch64/neoverse_n1, aarch64/neoverse_v1
repositories: eessi.io-2023.06-compat, eessi.io-2023.06-software

trz42 · 2025-04-23T19:17:29Z

bot: build instance:aws-dev-310 repo:eessi.io-2023.06-software arch:x86_64/amd/zen2

eessi-bot-devel-trz42 · 2025-04-23T19:17:33Z

Updates by the bot instance aws-dev-310 (click for details)

received bot command build instance:aws-dev-310 repo:eessi.io-2023.06-software arch:x86_64/amd/zen2 from trz42
- expanded format: build instance:aws-dev-310 repository:eessi.io-2023.06-software architecture:x86_64/amd/zen2
handling command build instance:aws-dev-310 repository:eessi.io-2023.06-software architecture:x86_64/amd/zen2 resulted in:
- submitted job 58633, for details & status see {2023.06}[2023a] cutadapt 4.9 (testing staging bundles) #91 (comment)

eessi-bot-devel-trz42 · 2025-04-23T19:17:38Z

New job on instance aws-dev-310 for CPU micro-architecture x86_64-amd-zen2 for repository eessi.io-2023.06-software in job dir /home/trz42/projects/def-users/trz42/PR303_signing/jobs/2025.04/pr_91/58633

date	job status	comment
Apr 23 19:17:37 UTC 2025	submitted	job id `58633` awaits release by job manager
Apr 23 19:18:06 UTC 2025	released	job awaits launch by Slurm scheduler
Apr 23 19:31:08 UTC 2025	finished	🤷 UNKNOWN (click for details) Job results file `_bot_job58633.result` does not exist in job directory, or parsing it failed. No artefacts were found/reported.
Apr 23 19:31:08 UTC 2025	test result	🤷 UNKNOWN (click for details) Job test file `_bot_job58633.test` does not exist in job directory, or parsing it failed.

trz42 · 2025-04-23T19:32:42Z

bot: build instance:aws-dev-310 repo:eessi.io-2023.06-software arch:x86_64/generic

eessi-bot-devel-trz42 · 2025-04-23T19:32:46Z

Updates by the bot instance aws-dev-310 (click for details)

received bot command build instance:aws-dev-310 repo:eessi.io-2023.06-software arch:x86_64/generic from trz42
- expanded format: build instance:aws-dev-310 repository:eessi.io-2023.06-software architecture:x86_64/generic
handling command build instance:aws-dev-310 repository:eessi.io-2023.06-software architecture:x86_64/generic resulted in:
- submitted job 58635, for details & status see {2023.06}[2023a] cutadapt 4.9 (testing staging bundles) #91 (comment)

eessi-bot-devel-trz42 · 2025-04-23T19:32:52Z

New job on instance aws-dev-310 for CPU micro-architecture x86_64-generic for repository eessi.io-2023.06-software in job dir /home/trz42/projects/def-users/trz42/PR303_signing/jobs/2025.04/pr_91/58635

date	job status	comment
Apr 23 19:32:50 UTC 2025	submitted	job id `58635` awaits release by job manager
Apr 23 19:33:13 UTC 2025	released	job awaits launch by Slurm scheduler
Apr 23 19:39:27 UTC 2025	running	job `58635` is running
Apr 23 19:55:27 UTC 2025	finished	😢 FAILURE (click triangle for details) Details ✅ job output file `slurm-58635.out` ✅ no message matching `FATAL:` ❌ found message matching `ERROR:` ❌ found message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-generic-1745437968.tar.gz` size: 1 MiB (1918184 bytes) entries: 162 modules under 2023.06/software/linux/x86_64/generic/modules/all `cutadapt/4.9-GCCcore-12.3.0.lua` `pigz/2.8-GCCcore-12.3.0.lua` software under 2023.06/software/linux/x86_64/generic/software `cutadapt/4.9-GCCcore-12.3.0` `pigz/2.8-GCCcore-12.3.0` other under 2023.06/software/linux/x86_64/generic `2023.06/scripts/gpu_support/nvidia/install_cuda_and_libraries.sh`
Apr 23 19:55:27 UTC 2025	test result	😢 FAILURE (click triangle for details) Reason EESSI test suite was not run, test step itself failed to execute. Details ✅ job output file `slurm-58635.out` ❌ found message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`

trz42 · 2025-04-23T19:36:11Z

bot: build instance:aws-dev-310 repo:eessi.io-2023.06-software arch:x86_64/amd/zen2

…efixes. This hook has caused more issues than it's worth, and the warning has been there for a long time now, so people should know.

… place

…4.12.2-GCCcore-12.3.0-Python-3.11.3 {2023.06}[2023a,grace] Z3 v4.12.2

…fix_lmod_hook Remove eessi startup hook that errors on CUDA being moved from CPU prefixes

{2023.06}[SYSTEM,icelake+cascadelake] EasyBuild 4.9.2 + 4.9.3

Co-authored-by: Bob Dröge <b.e.droge@rug.nl>

… for aarch64/* CPU targets

…on for aarch64/* targets to pass when using an x86_64 GitHub Actions runner, no longer needed due to 74b6b85

…i_missing_arm

trz42 · 2025-04-24T21:16:27Z

Builds failed because of the CUDA Lmod check (should be fixed now) and the missing reframe_config.py (also fixed)...
bot: build instance:aws-dev-310 repo:eessi.io-2023.06-software arch:x86_64/generic
bot: build instance:aws-dev-310 repo:eessi.io-2023.06-software arch:x86_64/amd/zen2
bot: build instance:aws-dev-310 repo:eessi.io-2023.06-software arch:x86_64/amd/zen3

eessi-bot-devel-trz42 · 2025-04-24T21:16:31Z

Updates by the bot instance aws-dev-310 (click for details)

received bot command build instance:aws-dev-310 repo:eessi.io-2023.06-software arch:x86_64/generic from trz42
- expanded format: build instance:aws-dev-310 repository:eessi.io-2023.06-software architecture:x86_64/generic
received bot command build instance:aws-dev-310 repo:eessi.io-2023.06-software arch:x86_64/amd/zen2 from trz42
- expanded format: build instance:aws-dev-310 repository:eessi.io-2023.06-software architecture:x86_64/amd/zen2
received bot command build instance:aws-dev-310 repo:eessi.io-2023.06-software arch:x86_64/amd/zen3 from trz42
- expanded format: build instance:aws-dev-310 repository:eessi.io-2023.06-software architecture:x86_64/amd/zen3
handling command build instance:aws-dev-310 repository:eessi.io-2023.06-software architecture:x86_64/generic resulted in:
- submitted job 58720, for details & status see {2023.06}[2023a] cutadapt 4.9 (testing staging bundles) #91 (comment)
handling command build instance:aws-dev-310 repository:eessi.io-2023.06-software architecture:x86_64/amd/zen2 resulted in:
- submitted job 58721, for details & status see {2023.06}[2023a] cutadapt 4.9 (testing staging bundles) #91 (comment)
handling command build instance:aws-dev-310 repository:eessi.io-2023.06-software architecture:x86_64/amd/zen3 resulted in:
- submitted job 58722, for details & status see {2023.06}[2023a] cutadapt 4.9 (testing staging bundles) #91 (comment)

eessi-bot-devel-trz42 · 2025-04-24T21:16:38Z

New job on instance aws-dev-310 for CPU micro-architecture x86_64-generic for repository eessi.io-2023.06-software in job dir /home/trz42/projects/def-users/trz42/PR303_signing/jobs/2025.04/pr_91/58720

date	job status	comment
Apr 24 21:16:36 UTC 2025	submitted	job id `58720` awaits release by job manager
Apr 24 21:17:30 UTC 2025	released	job awaits launch by Slurm scheduler
Apr 24 21:24:43 UTC 2025	running	job `58720` is running
Apr 24 21:45:16 UTC 2025	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-58720.out` ✅ no message matching `FATAL:` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-generic-1745530896.tar.gz` size: 1 MiB (1923970 bytes) entries: 162 modules under 2023.06/software/linux/x86_64/generic/modules/all `cutadapt/4.9-GCCcore-12.3.0.lua` `pigz/2.8-GCCcore-12.3.0.lua` software under 2023.06/software/linux/x86_64/generic/software `cutadapt/4.9-GCCcore-12.3.0` `pigz/2.8-GCCcore-12.3.0` other under 2023.06/software/linux/x86_64/generic `2023.06/scripts/gpu_support/nvidia/install_cuda_and_libraries.sh`
Apr 24 21:45:16 UTC 2025	test result	😢 FAILURE (click triangle for details) Reason EESSI test suite produced failures. ReFrame Summary [ FAILED ] Ran 10/10 test case(s) from 10 check(s) (10 failure(s), 0 skipped, 0 aborted) Details ✅ job output file `slurm-58720.out` ❌ found message matching `ERROR:` ❌ found message matching `[\sFAILED\s].Ran . test case`

eessi-bot-devel-trz42 · 2025-04-24T21:16:45Z

New job on instance aws-dev-310 for CPU micro-architecture x86_64-amd-zen2 for repository eessi.io-2023.06-software in job dir /home/trz42/projects/def-users/trz42/PR303_signing/jobs/2025.04/pr_91/58721

date	job status	comment
Apr 24 21:16:43 UTC 2025	submitted	job id `58721` awaits release by job manager
Apr 24 21:17:23 UTC 2025	released	job awaits launch by Slurm scheduler
Apr 24 21:23:34 UTC 2025	running	job `58721` is running
Apr 24 21:48:25 UTC 2025	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-58721.out` ✅ no message matching `FATAL:` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-amd-zen2-1745531009.tar.gz` size: 1 MiB (1929824 bytes) entries: 162 modules under 2023.06/software/linux/x86_64/amd/zen2/modules/all `cutadapt/4.9-GCCcore-12.3.0.lua` `pigz/2.8-GCCcore-12.3.0.lua` software under 2023.06/software/linux/x86_64/amd/zen2/software `cutadapt/4.9-GCCcore-12.3.0` `pigz/2.8-GCCcore-12.3.0` other under 2023.06/software/linux/x86_64/amd/zen2 `2023.06/scripts/gpu_support/nvidia/install_cuda_and_libraries.sh`
Apr 24 21:48:25 UTC 2025	test result	😢 FAILURE (click triangle for details) Reason EESSI test suite produced failures. ReFrame Summary [ FAILED ] Ran 10/10 test case(s) from 10 check(s) (10 failure(s), 0 skipped, 0 aborted) Details ✅ job output file `slurm-58721.out` ❌ found message matching `ERROR:` ❌ found message matching `[\sFAILED\s].Ran . test case`

eessi-bot-devel-trz42 · 2025-04-24T21:16:52Z

New job on instance aws-dev-310 for CPU micro-architecture x86_64-amd-zen3 for repository eessi.io-2023.06-software in job dir /home/trz42/projects/def-users/trz42/PR303_signing/jobs/2025.04/pr_91/58722

date	job status	comment
Apr 24 21:16:50 UTC 2025	submitted	job id `58722` awaits release by job manager
Apr 24 21:17:26 UTC 2025	released	job awaits launch by Slurm scheduler
Apr 24 21:23:37 UTC 2025	running	job `58722` is running
Apr 24 21:46:20 UTC 2025	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-58722.out` ✅ no message matching `FATAL:` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-amd-zen3-1745530924.tar.gz` size: 1 MiB (1929355 bytes) entries: 162 modules under 2023.06/software/linux/x86_64/amd/zen3/modules/all `cutadapt/4.9-GCCcore-12.3.0.lua` `pigz/2.8-GCCcore-12.3.0.lua` software under 2023.06/software/linux/x86_64/amd/zen3/software `cutadapt/4.9-GCCcore-12.3.0` `pigz/2.8-GCCcore-12.3.0` other under 2023.06/software/linux/x86_64/amd/zen3 `2023.06/scripts/gpu_support/nvidia/install_cuda_and_libraries.sh`
Apr 24 21:46:20 UTC 2025	test result	😢 FAILURE (click triangle for details) Reason EESSI test suite produced failures. ReFrame Summary [ FAILED ] Ran 10/10 test case(s) from 10 check(s) (10 failure(s), 0 skipped, 0 aborted) Details ✅ job output file `slurm-58722.out` ❌ found message matching `ERROR:` ❌ found message matching `[\sFAILED\s].Ran . test case`

…-layer into test_staging_bundles

trz42 · 2025-04-25T04:06:01Z

Build again...
bot: build instance:aws-dev-310 repo:eessi.io-2023.06-software arch:x86_64/generic
bot: build instance:aws-dev-310 repo:eessi.io-2023.06-software arch:x86_64/amd/zen2
bot: build instance:aws-dev-310 repo:eessi.io-2023.06-software arch:x86_64/amd/zen3

eessi-bot-devel-trz42 · 2025-04-25T04:06:04Z

Updates by the bot instance aws-dev-310 (click for details)

received bot command build instance:aws-dev-310 repo:eessi.io-2023.06-software arch:x86_64/generic from trz42
- expanded format: build instance:aws-dev-310 repository:eessi.io-2023.06-software architecture:x86_64/generic
received bot command build instance:aws-dev-310 repo:eessi.io-2023.06-software arch:x86_64/amd/zen2 from trz42
- expanded format: build instance:aws-dev-310 repository:eessi.io-2023.06-software architecture:x86_64/amd/zen2
received bot command build instance:aws-dev-310 repo:eessi.io-2023.06-software arch:x86_64/amd/zen3 from trz42
- expanded format: build instance:aws-dev-310 repository:eessi.io-2023.06-software architecture:x86_64/amd/zen3
handling command build instance:aws-dev-310 repository:eessi.io-2023.06-software architecture:x86_64/generic resulted in:
- submitted job 58895, for details & status see {2023.06}[2023a] cutadapt 4.9 (testing staging bundles) #91 (comment)
handling command build instance:aws-dev-310 repository:eessi.io-2023.06-software architecture:x86_64/amd/zen2 resulted in:
- submitted job 58896, for details & status see {2023.06}[2023a] cutadapt 4.9 (testing staging bundles) #91 (comment)
handling command build instance:aws-dev-310 repository:eessi.io-2023.06-software architecture:x86_64/amd/zen3 resulted in:
- submitted job 58897, for details & status see {2023.06}[2023a] cutadapt 4.9 (testing staging bundles) #91 (comment)

eessi-bot-devel-trz42 · 2025-04-25T04:06:10Z

New job on instance aws-dev-310 for CPU micro-architecture x86_64-generic for repository eessi.io-2023.06-software in job dir /home/trz42/projects/def-users/trz42/PR303_signing/jobs/2025.04/pr_91/58895

date	job status	comment
Apr 25 04:06:09 UTC 2025	submitted	job id `58895` awaits release by job manager
Apr 25 04:07:12 UTC 2025	released	job awaits launch by Slurm scheduler
Apr 25 04:49:59 UTC 2025	finished	🤷 UNKNOWN (click for details) Job results file `_bot_job58895.result` does not exist in job directory, or parsing it failed. No artefacts were found/reported.
Apr 25 04:49:59 UTC 2025	test result	🤷 UNKNOWN (click for details) Job test file `_bot_job58895.test` does not exist in job directory, or parsing it failed.

eessi-bot-devel-trz42 · 2025-04-25T04:06:17Z

New job on instance aws-dev-310 for CPU micro-architecture x86_64-amd-zen2 for repository eessi.io-2023.06-software in job dir /home/trz42/projects/def-users/trz42/PR303_signing/jobs/2025.04/pr_91/58896

date	job status	comment
Apr 25 04:06:15 UTC 2025	submitted	job id `58896` awaits release by job manager
Apr 25 04:07:05 UTC 2025	released	job awaits launch by Slurm scheduler
Apr 25 04:13:16 UTC 2025	running	job `58896` is running
Apr 25 04:23:54 UTC 2025	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-58896.out` ✅ no message matching `FATAL:` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-amd-zen2-1745554734.tar.gz` size: 1 MiB (1940936 bytes) entries: 163 modules under 2023.06/software/linux/x86_64/amd/zen2/modules/all `cutadapt/4.9-GCCcore-12.3.0.lua` `pigz/2.8-GCCcore-12.3.0.lua` software under 2023.06/software/linux/x86_64/amd/zen2/software `cutadapt/4.9-GCCcore-12.3.0` `pigz/2.8-GCCcore-12.3.0` other under 2023.06/software/linux/x86_64/amd/zen2 `2023.06/init/easybuild/eb_hooks.py` `.lmod/SitePackage.lua`
Apr 25 04:23:54 UTC 2025	test result	😢 FAILURE (click triangle for details) Reason EESSI test suite produced failures. ReFrame Summary [ FAILED ] Ran 10/10 test case(s) from 10 check(s) (10 failure(s), 0 skipped, 0 aborted) Details ✅ job output file `slurm-58896.out` ❌ found message matching `ERROR:` ❌ found message matching `[\sFAILED\s].Ran . test case`

eessi-bot-devel-trz42 · 2025-04-25T04:06:23Z

New job on instance aws-dev-310 for CPU micro-architecture x86_64-amd-zen3 for repository eessi.io-2023.06-software in job dir /home/trz42/projects/def-users/trz42/PR303_signing/jobs/2025.04/pr_91/58897

date	job status	comment
Apr 25 04:06:22 UTC 2025	submitted	job id `58897` awaits release by job manager
Apr 25 04:07:09 UTC 2025	released	job awaits launch by Slurm scheduler
Apr 25 04:13:19 UTC 2025	running	job `58897` is running
Apr 25 04:22:52 UTC 2025	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-58897.out` ✅ no message matching `FATAL:` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-amd-zen3-1745554691.tar.gz` size: 1 MiB (1941962 bytes) entries: 163 modules under 2023.06/software/linux/x86_64/amd/zen3/modules/all `cutadapt/4.9-GCCcore-12.3.0.lua` `pigz/2.8-GCCcore-12.3.0.lua` software under 2023.06/software/linux/x86_64/amd/zen3/software `cutadapt/4.9-GCCcore-12.3.0` `pigz/2.8-GCCcore-12.3.0` other under 2023.06/software/linux/x86_64/amd/zen3 `2023.06/init/easybuild/eb_hooks.py` `.lmod/SitePackage.lua`
Apr 25 04:22:52 UTC 2025	test result	😢 FAILURE (click triangle for details) Reason EESSI test suite produced failures. ReFrame Summary [ FAILED ] Ran 10/10 test case(s) from 10 check(s) (10 failure(s), 0 skipped, 0 aborted) Details ✅ job output file `slurm-58897.out` ❌ found message matching `ERROR:` ❌ found message matching `[\sFAILED\s].Ran . test case`

trz42 · 2025-04-25T04:50:48Z

This PR doesn't work at all.

eessi-bot-devel-trz42 · 2025-04-25T04:50:53Z

PR merged! Moved ['/home/trz42/projects/def-users/trz42/PR303_signing/jobs/2025.04/pr_91/58633', '/home/trz42/projects/def-users/trz42/PR303_signing/jobs/2025.04/pr_91/58635', '/home/trz42/projects/def-users/trz42/PR303_signing/jobs/2025.04/pr_91/58636', '/home/trz42/projects/def-users/trz42/PR303_signing/jobs/2025.04/pr_91/58637', '/home/trz42/projects/def-users/trz42/PR303_signing/jobs/2025.04/pr_91/58720', '/home/trz42/projects/def-users/trz42/PR303_signing/jobs/2025.04/pr_91/58721', '/home/trz42/projects/def-users/trz42/PR303_signing/jobs/2025.04/pr_91/58722', '/home/trz42/projects/def-users/trz42/PR303_signing/jobs/2025.04/pr_91/58895', '/home/trz42/projects/def-users/trz42/PR303_signing/jobs/2025.04/pr_91/58896', '/home/trz42/projects/def-users/trz42/PR303_signing/jobs/2025.04/pr_91/58897'] to /home/trz42/projects/def-users/trz42/PR303_signing/trash_bin/trz42/software-layer/2025.04.25

PetrKralCZ and others added 11 commits April 17, 2025 15:10

{bio}[2023a] bcgTree 1.2.1

8810fec

Update easystacks/software.eessi.io/2023.06/eessi-2023.06-eb-5.0.0-20…

a225e83

…23a.yml

Apply suggestions from code review

91f3bf9

update commits

Add initial Easystack file to install EB 4.8.2 with EB 5.0.0, which w…

d871128

…ill be used by the bootstrap of load_easybuild_version anyway

Add two more easystacks that will use EB 5.0 for bootstrapping anyway

57b0d08

Fix regex so that it also works for e.g. eb-4.9.0.yml, i.e. doesn't r…

58de3ac

…equire a suffix

Use eb 4.9.4 to install EB 4.X versions

a962fe1

Apply suggestions from code review

78f0391

use latest commit of merged prs for MUSCLE and bcgTree

Merge pull request EESSI#1039 from casparvl/001-eb-4.8.2

59a4c82

{2023.06}[SYSTEM,icelake+cascadelake] EasyBuild 4.8.2 + 4.9.0 + 4.9.1 + 4.9.4 + 5.0.0, EESSI-extend

Reshuffle the EB installations a bit, and make sure to do all of them…

837db0a

… first

{2023.06}[2023a] cutadapt 4.9 (testing staging bundles)

60b1434

trz42 added enhancement New feature or request development labels Apr 23, 2025

Merge branch '2023.06-software.eessi.io' of github-trz:trz42/software…

a4f0e26

…-layer into test_staging_bundles

Caspar van Leeuwen and others added 16 commits April 24, 2025 10:08

Remove eessi startup hook that errors on CUDA being moved from CPU pr…

b5bbef8

…efixes. This hook has caused more issues than it's worth, and the warning has been there for a long time now, so people should know.

Restore original lmod sitepackage

bd80f3a

added description

a12ba30

Remove now unused function

ddf2ee2

Make host injections install work temporarily

e225716

Undo temporary workaround now that host_injections for icelake are in…

d5bddbc

… place

Merge pull request EESSI#1045 from TopRichard/eessi-2023.06-grace-Z3-…

f03b393

…4.12.2-GCCcore-12.3.0-Python-3.11.3 {2023.06}[2023a,grace] Z3 v4.12.2

Merge pull request EESSI#1044 from casparvl/remove_cuda_moved_cpu_pre…

e141ff1

…fix_lmod_hook Remove eessi startup hook that errors on CUDA being moved from CPU prefixes

Merge branch '2023.06-software.eessi.io' into icelake_cclake_ebs

3ab7108

Merge pull request EESSI#1041 from casparvl/icelake_cclake_ebs

f1c0ac1

{2023.06}[SYSTEM,icelake+cascadelake] EasyBuild 4.9.2 + 4.9.3

add missing link to pr

117cbee

Co-authored-by: Bob Dröge <b.e.droge@rug.nl>

use Arm GitHub Actions runner when checking for missing installations…

74b6b85

… for aarch64/* CPU targets

remove hooks that were only used to get checks for missing installati…

64679f0

…on for aarch64/* targets to pass when using an x86_64 GitHub Actions runner, no longer needed due to 74b6b85

Merge pull request EESSI#1046 from boegel/2023.06-software.eessi.io_c…

bb47268

…i_missing_arm

Merge branch '2023.06-software.eessi.io' into 2023.06-2023a-bcgTree

fc53fb3

Merge pull request EESSI#1032 from PetrKralCZ/2023.06-2023a-bcgTree

50a79dc

Merge branch '2023.06-software.eessi.io' of github-trz:EESSI/software…

bd0833b

…-layer into test_staging_bundles

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