Remove test skipping

Author: benjeffery

.github/workflows/tests.yml

@@ -126,13 +126,6 @@ jobs:
             python -m pytest -x --cov=tskit --cov-report=xml --cov-branch -n2 --durations=20 tests
           fi
 
-      # - name: Run numba tests
-      #   working-directory: python
-      #   run: |
-      #     source ~/.profile
-      #     conda activate anaconda-client-env
-      #     python -m pytest -x --only-numba-tests --cov=tskit.numba --cov-report=xml --cov-branch -n2 --durations=20 tests
-  
       - name: Upload coverage to Codecov
         uses: codecov/codecov-action@v5.4.0
         with:

python/requirements/CI-complete/requirements.txt

@@ -6,6 +6,7 @@ lshmm==0.0.8
 msgpack==1.1.0
 msprime==1.3.3
 networkx==3.2.1
+numba==0.61.2
 portion==2.6.0
 pytest==8.3.5
 pytest-cov==6.0.0

python/requirements/CI-tests-pip/requirements.txt

@@ -11,4 +11,5 @@ networkx==3.2.1
 msgpack==1.1.0
 newick==1.10.0
 kastore==0.3.3
-jsonschema==4.23.0
+jsonschema==4.23.0
+numba==0.61.2

python/tests/conftest.py

@@ -86,18 +86,6 @@ def pytest_collection_modifyitems(config, items):
         for item in items:
             if "slow" in item.keywords:
                 item.add_marker(skip_slow)
-    # if config.getoption("--only-numba-tests"):
-    #     only_numba = pytest.mark.skip(reason="--only-numba-tests specified")
-    #     for item in items:
-    #         if "numba" not in item.keywords:
-    #             item.add_marker(only_numba)
-    else:
-        numba_tests_skipped = pytest.mark.skip(
-            reason="--only-numba-tests not specified, skipping numba tests"
-        )
-        for item in items:
-            if "numba" in item.keywords:
-                item.add_marker(numba_tests_skipped)
 
 
 @fixture

python/tests/test_jit.py

@@ -17,7 +17,6 @@ def test_numba_import_error():
             import tskit.jit.numba  # noqa: F401
 
 
-@pytest.mark.numba
 @pytest.mark.parametrize("ts", tsutil.get_example_tree_sequences())
 def test_correct_trees_forward(ts):
     import tskit.jit.numba as jit_numba
@@ -39,7 +38,6 @@ def test_correct_trees_forward(ts):
             assert edge.id == out_index[edge_out_index]
 
 
-@pytest.mark.numba
 def test_using_from_jit_function():
     """
     Test that we can use the numba jit function from the tskit.jit module.