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Expand file tree Collapse file tree Original file line number Diff line number Diff line change @@ -9353,11 +9353,9 @@ def segregating_sites(
93539353 minus one], per unit of chromosome length.
93549354 If all sites have at most two alleles in ``A``,
93559355 this is the density of segregating/polymorphic sites in ``A``
9356- (since the "minus one" reduces the sum for ancestral allele).
9357- Hence, multiple mutations per site increase the
9358- returned value, but only if they segregate in ``A``.
9359- If an ancestral allele does not segregate in ``A``,
9360- the "minus one" will reduce the sum for another allele.
9356+ (since the "minus one" reduces the sum for monoallelic sites).
9357+ For sites with more than two alleles, the sum is increased by
9358+ one for each additional allele segregating in ``A``.
93619359 To get the **number** of segregating alleles in ``A``,
93629360 use ``span_normalise=False``.
93639361
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