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update codecov action to fix broken gpg key, and bump tskit actions
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.github/workflows/docs.yml

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jobs:
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Docs:
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uses: tskit-dev/.github/.github/workflows/docs.yml@v15
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uses: tskit-dev/.github/.github/workflows/docs.yml@v17
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with:
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pyproject-directory: python
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additional-apt-packages: doxygen

.github/workflows/lint.yml

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jobs:
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Lint:
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uses: tskit-dev/.github/.github/workflows/lint.yml@v15
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uses: tskit-dev/.github/.github/workflows/lint.yml@v17
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with:
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pyproject-directory: python

.github/workflows/tests.yml

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packaging:
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name: Python packaging
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uses: tskit-dev/.github/.github/workflows/python-packaging.yml@v15
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uses: tskit-dev/.github/.github/workflows/python-packaging.yml@v17
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with:
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pyproject-directory: python
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cli-test-cmd: tskit --help
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test-c:
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name: C tests
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uses: tskit-dev/.github/.github/workflows/c-tests.yml@v15
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uses: tskit-dev/.github/.github/workflows/c-tests.yml@v17
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with:
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library-directory: c
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secrets: inherit
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test-python-c:
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name: Python-C tests
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uses: tskit-dev/.github/.github/workflows/python-c-tests.yml@v15
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uses: tskit-dev/.github/.github/workflows/python-c-tests.yml@v17
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with:
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tests: python/tests/test_python_c.py python/tests/test_dict_encoding.py
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pyproject-directory: python
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test:
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name: Python
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uses: tskit-dev/.github/.github/workflows/python-tests.yml@v15
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uses: tskit-dev/.github/.github/workflows/python-tests.yml@v17
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with:
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os: ${{ matrix.os }}
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python-version: ${{ matrix.python }}
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python/tests/test_jit.py
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- name: Upload coverage to Codecov
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uses: codecov/codecov-action@v5.5.2
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uses: codecov/codecov-action@v7.0.0
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with:
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token: ${{ secrets.CODECOV_TOKEN }}
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fail_ci_if_error: true

.github/workflows/wheels.yml

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jobs:
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build-wheels:
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if: "!startsWith(github.ref, 'refs/tags/C_')"
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uses: tskit-dev/.github/.github/workflows/build-wheels.yml@v15
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uses: tskit-dev/.github/.github/workflows/build-wheels.yml@v17
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with:
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pyproject-directory: python
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