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Expand file tree Collapse file tree Original file line number Diff line number Diff line change @@ -702,9 +702,13 @@ similarly to most other functions with respect to `sample_sets` and `indexes`.
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703703Two-locus statistics can be computed using two modes, either ` site ` or
704704` branch ` , and these should be interpreted in the same way as these modes in the
705- single-site statistics. Within this framework, we also implement polarisation,
706- but do not expose it to the user, opting to provide statistics that are
707- polarised where appropriate.
705+ single-site statistics. Within this framework, statistics may be either
706+ polarised or unpolarised. For statistics that are polarised, we compute
707+ statistic values for pairs of derived alleles. Unpolarised statistics compute
708+ statistics over all possible alleles, derived and ancestral, and the result in
709+ averaged over statistics computed for all pairs of alleles (see weighting
710+ schemes below). The option for polarisation is not exposed to the user.
711+ Instead, we implement statistics that are polarised where appropriate.
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709713(sec_stats_two_locus_site)=
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