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Merged
benjeffery merged 1 commit into from
May 21, 2025
Merged

Skip more slow tests #3172

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1 change: 1 addition & 0 deletions python/tests/test_haplotype_matching.py
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Original file line number Diff line number Diff line change
Expand Up @@ -1312,6 +1312,7 @@ def test_switch_each_sample_missing_middle(self):


class TestSimulationExamples:
@pytest.mark.slow
@pytest.mark.parametrize("n", [3, 10, 50])
@pytest.mark.parametrize("L", [1, 10, 100])
def test_continuous_genome(self, n, L):
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2 changes: 2 additions & 0 deletions python/tests/test_tables.py
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Expand Up @@ -5064,6 +5064,7 @@ def test_all_shared_example(self):
uni.union(tables, node_mapping, record_provenance=False)
uni.assert_equals(tables)

@pytest.mark.slow
def test_no_add_pop(self):
self.verify_union(
*self.split_example(self.get_msprime_example(10, 10, seed=135), 10),
Expand Down Expand Up @@ -5093,6 +5094,7 @@ def test_provenance(self):
tables.provenances.truncate(tables.provenances.num_rows - 1)
assert tables.provenances == tables_copy.provenances

@pytest.mark.slow
def test_examples(self):
for N in [2, 4, 5]:
for T in [2, 5, 20]:
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1 change: 1 addition & 0 deletions python/tests/test_topology.py
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Expand Up @@ -4230,6 +4230,7 @@ def test_single_multiroot_tree_recurrent_mutations(self):
for keep in [True, False]:
self.verify_simplify_haplotypes(ts, samples, keep_unary=keep)

@pytest.mark.slow
def test_many_multiroot_trees_recurrent_mutations(self):
ts = msprime.simulate(7, recombination_rate=1, random_seed=10)
assert ts.num_trees > 3
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3 changes: 3 additions & 0 deletions python/tests/test_tree_stats.py
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Expand Up @@ -596,6 +596,7 @@ def test_short_sequence_length(self):
assert ts.num_trees > 2
self.verify(ts)

@pytest.mark.slow
def test_wright_fisher_unsimplified(self):
tables = wf.wf_sim(
4,
Expand Down Expand Up @@ -784,6 +785,7 @@ def test_single_tree_sites_no_mutations(self):
tables.sites.add_row(0.2, "aaa")
self.verify(tables.tree_sequence())

@pytest.mark.slow
def test_single_tree_jukes_cantor(self):
ts = msprime.simulate(6, random_seed=1, mutation_rate=1)
ts = tsutil.jukes_cantor(ts, 20, 1, seed=10)
Expand All @@ -805,6 +807,7 @@ def test_many_trees_infinite_sites(self):
assert ts.num_trees > 2
self.verify(ts)

@pytest.mark.slow
def test_many_trees_sequence_length_infinite_sites(self):
for L in [0.5, 1.5, 3.3333]:
ts = msprime.simulate(
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