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Fix var name typo in popgen.md #324

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hyanwong merged 1 commit into from
Jun 3, 2026
+4 −4
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Fix var name typo in popgen.md #324

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8 changes: 4 additions & 4 deletions popgen.md
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Original file line number Diff line number Diff line change
Expand Up @@ -447,16 +447,16 @@ def tree_centre_x(i, n):
return l + (w - (l+r)/n) * i + w/2

trees = list(tskit.all_trees(3))
concat_trees = trees[0].tree_sequence.concatenate(*[t.tree_sequence for t in trees[1:]])
style = "".join(styles) + ".sample text.lab {font-size: 0.7em;}"
concat_ts = trees[0].tree_sequence.concatenate(*[t.tree_sequence for t in trees[1:]])
style = "".join(styles) # previously defined to colour nodes by population ID, e.g. p1, p2

concat_trees.draw_svg(
concat_ts.draw_svg(
title="", # Make room for labels
x_axis=False, # this is not "along the genome", so X axis is meaningless
style=style.replace(".leaf.p", ".leaf.n"), # Hack to map node IDs to population colours
node_labels = {pop.id: pop.metadata["name"] for pop in simplified_ts.populations()},
preamble="".join([
f'<text text-anchor="middle" y="15" x="{tree_centre_x(i, ts.num_trees)}">{embedded_topologies[t.rank()]} trees</text>'
f'<text text-anchor="middle" y="15" x="{tree_centre_x(i, concat_ts.num_trees)}">{embedded_topologies[t.rank()]} trees</text>'
for i, t in enumerate(trees)
]),
)
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