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postgres_utils.py
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174 lines (152 loc) · 6.15 KB
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import pandas as pd
from common_scaffold.tools.BaseTool import FatalError
from common_scaffold.tools.db_utils import db_config
import sqlalchemy
import psycopg2
import os
import subprocess
import logging
"""
Postgres Config:
- db_type
- db_name
- sql_file
"""
# Reference: https://learn.microsoft.com/en-us/windows/wsl/tutorials/wsl-database#install-postgresql
def pg_ident(identifier: str) -> str:
"""Safely quote PostgreSQL identifiers."""
return '"' + identifier.replace('"', '""') + '"'
def load_db(sql_file: str, db_name: str):
if check_db_exists(db_name):
logging.getLogger(__name__).warning(f"Database '{db_name}' already exists. Cleaning up before loading dump.")
clean_up(db_name)
# raise FatalError(f"Database '{db_name}' already exists. Cannot load dump into existing database.")
try:
logging.getLogger(__name__).debug(f"Loading PostgreSQL dump from '{sql_file}' into database '{db_name}'")
conn = psycopg2.connect(
dbname="postgres",
user=db_config.PG_USER,
password=db_config.PG_PASSWORD,
host=db_config.PG_HOST,
port=db_config.PG_PORT,
)
conn.set_isolation_level(psycopg2.extensions.ISOLATION_LEVEL_AUTOCOMMIT)
cur = conn.cursor()
# Create the database
cur.execute(f"CREATE DATABASE {pg_ident(db_name)} WITH ENCODING = \'UTF8\' LC_COLLATE=\'C\' LC_CTYPE=\'C\' TEMPLATE=template0;")
cur.close()
conn.close()
cmd = [
db_config.PG_CLIENT,
f"-h{db_config.PG_HOST}",
f"-U{db_config.PG_USER}",
"-d", db_name,
"-f", sql_file
]
env = os.environ.copy()
env["PGPASSWORD"] = db_config.PG_PASSWORD
env["PGCLIENTENCODING"] = "UTF8"
# subprocess.run(cmd, check=True, env=env)
result = subprocess.run(cmd, check=True, env=env, stdout=subprocess.PIPE, stderr=subprocess.PIPE, text=True)
if result.stdout:
logging.getLogger(__name__).debug(f"PostgreSQL load stdout: {result.stdout}")
if result.stderr:
logging.getLogger(__name__).warning(f"PostgreSQL load stderr: {result.stderr}")
except Exception as e:
raise FatalError(f"PostgreSQL load error ({type(e).__name__}): {str(e)}")
finally:
if "cur" in locals():
cur.close()
if "conn" in locals():
conn.close()
def check_db_exists(db_name):
try:
conn = psycopg2.connect(
dbname="postgres",
user=db_config.PG_USER,
password=db_config.PG_PASSWORD,
host=db_config.PG_HOST,
port=db_config.PG_PORT,
)
conn.set_isolation_level(psycopg2.extensions.ISOLATION_LEVEL_AUTOCOMMIT)
cur = conn.cursor()
cur.execute("SELECT 1 FROM pg_database WHERE datname=%s;", (db_name,))
exists = cur.fetchone() is not None
return exists
except Exception as e:
raise FatalError(f"PostgreSQL existence check error ({type(e).__name__}): {str(e)}")
finally:
if "cur" in locals():
cur.close()
if "conn" in locals():
conn.close()
def clean_up(db_name):
logging.getLogger(__name__).debug(f"Cleaning up PostgreSQL database '{db_name}'")
try:
conn = psycopg2.connect(
dbname="postgres",
user=db_config.PG_USER,
password=db_config.PG_PASSWORD,
host=db_config.PG_HOST,
port=db_config.PG_PORT,
)
conn.set_isolation_level(psycopg2.extensions.ISOLATION_LEVEL_AUTOCOMMIT)
cur = conn.cursor()
cur.execute("SELECT 1 FROM pg_database WHERE datname=%s;", (db_name,))
exists = cur.fetchone() is not None
if exists:
# Terminate all active connections to the target DB
cur.execute("""SELECT pg_terminate_backend(pid) FROM pg_stat_activity WHERE datname=%s AND pid <> pg_backend_pid();""", (db_name,))
# Drop the database
cur.execute(f"DROP DATABASE {pg_ident(db_name)};")
except Exception as e:
raise FatalError(f"PostgreSQL cleanup error ({type(e).__name__}): {str(e)}")
finally:
if "cur" in locals():
cur.close()
if "conn" in locals():
conn.close()
class PostgresQueryDBTool:
@staticmethod
def check_args(db_client, query):
if 'db_name' not in db_client:
raise FatalError(f"Missing `db_name` for postgres db_client: {db_client}")
return {
"db_name": db_client["db_name"],
"sql": query
}
@staticmethod
def exec(db_name, sql):
uri = (
f"postgresql+psycopg2://{db_config.PG_USER}:{db_config.PG_PASSWORD}"
f"@{db_config.PG_HOST}:{db_config.PG_PORT}/{db_name}"
"?options=-c default_transaction_read_only=on"
)
with sqlalchemy.create_engine(uri).connect() as conn:
try:
result_df = pd.read_sql(sqlalchemy.text(sql), conn)
except Exception as e:
raise ValueError(f"Postgres query exectution error ({type(e).__name__}): {str(e)}")
return db_config.serialize(result_df)
class PostgresListDBTool:
@staticmethod
def check_args(db_client):
if 'db_name' not in db_client:
raise FatalError(f"Missing `db_name` for postgres db_client: {db_client}")
return {
"db_name": db_client["db_name"],
"query":"SELECT table_name FROM information_schema.tables WHERE table_schema = 'public';"
}
@staticmethod
def exec(db_name, query):
uri = (
f"postgresql+psycopg2://{db_config.PG_USER}:{db_config.PG_PASSWORD}"
f"@{db_config.PG_HOST}:{db_config.PG_PORT}/{db_name}"
"?options=-c default_transaction_read_only=on"
)
with sqlalchemy.create_engine(uri).connect() as conn:
try:
result_df = pd.read_sql(sqlalchemy.text(query), conn)
return result_df.iloc[:, 0].tolist()
except Exception as e:
raise FatalError(f"Postgres list tables execution error ({type(e).__name__}): {str(e)}")